Spirosoma oryzicola: LQ777_18440
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Entry
LQ777_18440 CDS
T08981
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
soq
Spirosoma oryzicola
Pathway
soq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
soq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LQ777_18440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
soq03019
]
LQ777_18440
03009 Ribosome biogenesis [BR:
soq03009
]
LQ777_18440
Enzymes [BR:
soq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LQ777_18440
Messenger RNA biogenesis [BR:
soq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LQ777_18440
Ribosome biogenesis [BR:
soq03009
]
Prokaryotic type
rRNA helicases
LQ777_18440
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
UBA
Cas3-like_C_2
AAA_19
UBA_DHX29
Card1_endonuc
NAT10_TcmA_helicase
Motif
Other DBs
NCBI-ProteinID:
UHG90221
LinkDB
All DBs
Position
4343999..4346041
Genome browser
AA seq
680 aa
AA seq
DB search
MNTTNTNIDGQDENLIVDQQTTDVAQNDANDVETPVSNTEVQQAVAEVVSVEDAPVDSAP
KADPNKPLFSSLDISDELLQAVTDMGFTSPSPIQAEAIPPILAGRDVIGQAQTGTGKTAA
FGIPALELIDVQDRSVQTLILCPTRELALQVADEIKKLAKYKRGVRVEAIYGGDSIERQI
RSLKSGVHIVIGTPGRVMDHMERNTLKLDHVKMMILDEADEMLDMGFREDIESILDEMPE
ERQTILFSATMSKPIMQITQKFQKDPVLVKVVKKELTNTNIEQVYFEVKPKAKVEVMCRL
IDMYDLKLLLVFCNTKRKVDEIVEDLQIRGYQAEGLHGDLRQAQRNNVMSKFRSGTTSIL
VATDVAARGIDVDDVDAVINFDIPLDEEYYVHRIGRTGRAGKSGRAFSLVGRDEKYRFRE
IQSYTKVRVEKGVIPSFEDIVGVRKARFIEQIRQTVADSQDLDLYTDMLTQLQHAGFSTE
QIVAALVKRSMGLEKNEFADQNLGLEDDRRRERNEGRDRYADRGRGDRGESRFGDRRGRS
EGAGSRFGDRDRNDRGGSRFGDRDRNDRGGSRFGDRNEGPRDGGGRRGYFDRDDQRAPRE
RDANMTRLMVSIGRKDYVRPGDIVGAIAGEANIPGNTIGSIDIFDKHTYVDVPKEVANRV
LDVMEGNTIKGRRVNIEIAR
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atgaacacgacaaacacaaacattgacggtcaggacgaaaacctgatcgtagatcaacaa
acaaccgacgttgcacaaaacgacgcaaacgacgtagaaacgccggtttcgaacacggag
gttcagcaggctgtcgccgaagtagtttctgtagaagacgctcctgtagatagcgctcct
aaagccgatccgaacaagcctttgttctctagtctggacatttccgatgaactgttacag
gcggttaccgatatgggtttcactagcccatcgcccattcaggccgaagcgattccaccg
attcttgctggacgtgacgttattggacaggcacagacgggtacgggtaaaacagccgct
tttggtattccggctcttgaattgattgatgttcaggaccgttcggtccagacactgatc
ctttgcccaacgcgtgagctggctttacaggttgccgatgagatcaaaaaattggcaaaa
tacaagcgtggtgttcgcgttgaagcgatttacggtggtgattccatcgagcggcagatt
cgttcgttaaagagtggtgttcatatcgtgatcggtacaccaggccgggttatggaccac
atggaacggaataccctcaagctcgaccacgttaagatgatgattcttgacgaagcggac
gaaatgctggatatgggcttccgggaagatatcgagagcattctggacgaaatgcccgaa
gagcgtcagacgatcctgttctcggctacgatgtcgaagccgatcatgcagatcacgcag
aaattccagaaagatccggtgctggtgaaagttgtcaagaaagaattgacaaacaccaac
atcgaacaggtttatttcgaagtaaaaccaaaggcgaaagttgaggttatgtgccgtctg
atcgacatgtacgacctgaaactgctgctggttttctgtaatacgaagcggaaagtcgac
gagatcgttgaagacctgcaaattcggggctatcaggccgaagggttgcacggtgatctg
cgtcaggcacaacgcaacaatgtgatgagcaaattccggtcgggtacaaccagcatcctg
gttgctacggacgtggctgctcgtggtatcgacgttgacgatgtagacgcggtgatcaac
tttgacattccgctcgacgaagaatattacgtacaccgcattggccggacgggccgcgcg
ggcaaatcgggccgggcgttctcgctggttggccgggacgaaaaataccgtttccgcgaa
atccagtcgtacaccaaagtacgcgttgaaaaaggcgtaattccttcttttgaagatatc
gttggtgtccgcaaagcccggttcatcgaacaaatccggcagaccgttgcagacagtcag
gatctcgacctgtacacggacatgcttacccaactgcaacacgcgggcttctcgaccgag
cagatcgtagccgccctagtgaaacgcagcatgggtctggagaaaaacgaatttgccgat
cagaaccttggtctggaagatgaccgtcgtcgggaacgcaatgaaggtcgtgatcgctat
gctgatcggggccgtggtgaccggggcgaaagccgctttggcgatcgtcggggtcgtagc
gaaggagcgggtagccgctttggtgatcgggatcgcaatgaccggggtggctcacgcttc
ggtgatcgggatcgtaatgatcggggtggttctcgcttcggtgatcgcaacgaaggtcca
cgtgatggaggtggccgccgtggttatttcgaccgcgacgatcaacgtgctccccgcgaa
cgcgatgcgaacatgactcgtctgatggtaagcatcggtcgtaaagattacgtccgtccg
ggcgacatcgttggtgccattgctggtgaagctaatattcccggcaacacaatcggcagc
atcgatattttcgacaagcacacctacgttgacgttccgaaagaagttgccaaccgcgtt
cttgacgtgatggaaggcaatacaattaaaggacgccgggtgaacattgagattgctcgg
tag
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