Spirosoma oryzicola: LQ777_23540
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Entry
LQ777_23540 CDS
T08981
Name
(GenBank) 3'-5' exonuclease
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
soq
Spirosoma oryzicola
Pathway
soq03030
DNA replication
soq03430
Mismatch repair
soq03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
soq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LQ777_23540
03430 Mismatch repair
LQ777_23540
03440 Homologous recombination
LQ777_23540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
soq03032
]
LQ777_23540
03400 DNA repair and recombination proteins [BR:
soq03400
]
LQ777_23540
Enzymes [BR:
soq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LQ777_23540
DNA replication proteins [BR:
soq03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LQ777_23540
DNA repair and recombination proteins [BR:
soq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LQ777_23540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
ExoX-like_C
RNase_H_2
Motif
Other DBs
NCBI-ProteinID:
UHG91189
LinkDB
All DBs
Position
complement(5573375..5574196)
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AA seq
273 aa
AA seq
DB search
MTHQLVLKKPLAFFDLETTGVNVAKDRIIDICIIKALPNGEVATKTQRVNPGMPIPLESS
LIHGIYDDDVKDAPPFKSVARTLAQFMDGCDLAGFNSNRFDVPVLVEEFLRANVEFDMKN
RRMVDAQRIFHLMEPRNLSAAYKFYCNKELVGAHGAEADTIASLEVLNAQVQRYMGMVAK
ADSGQDVVFDNDVDMLHSLTANKNVDLAGRIVINEKGEEVFNFGKHKGLPVLEVLKKEPS
FYDWMLKGEFPLDTKRRLTEIRLRMFSNGHAKK
NT seq
822 nt
NT seq
+upstream
nt +downstream
nt
atgacgcatcaacttgtactcaaaaaaccgctcgctttctttgacctcgaaacgactggc
gtaaacgtagcgaaagaccgtattattgacatttgcatcattaaggcgttaccaaatggt
gaagtagctactaaaacccagcgcgttaaccctgggatgcctattccgttggagtcgagc
ttgattcacggcatttatgacgatgatgtaaaggatgcccctccctttaaatccgtcgcc
cgcacattagcgcagtttatggacggttgcgatctggcaggattcaacagcaaccggttc
gatgttcccgtactggttgaggagttcttacgcgctaatgtcgaatttgacatgaaaaac
cgtcggatggtcgatgcacaacgtatttttcatcttatggagccacgtaatctgtcggcg
gcttacaaattctactgcaacaaagagttagttggtgcgcacggggccgaagccgacacg
attgcgtcgctggaagtgcttaatgcgcaggtgcagcgttacatgggcatggtcgccaaa
gcagatagcggacaggacgttgtttttgacaacgatgtggatatgcttcacagcctgacc
gccaacaaaaatgtcgatttagctggccggattgttatcaacgaaaaaggcgaagaggtt
ttcaattttggcaaacacaaaggactgcctgtgctggaagtattgaagaaagagccttcg
ttctacgattggatgttgaagggcgaatttccactcgataccaagcggaggctaacggaa
attcggttgagaatgttcagcaacggccatgcgaaaaagtaa
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