Sorangium sp. So ce836: NQZ70_01818
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Entry
NQZ70_01818 CDS
T11263
Symbol
rtcB_1
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
sorg Sorangium sp. So ce836
Brite
KEGG Orthology (KO) [BR:
sorg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sorg03016
]
NQZ70_01818 (rtcB_1)
Enzymes [BR:
sorg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
NQZ70_01818 (rtcB_1)
Transfer RNA biogenesis [BR:
sorg03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
NQZ70_01818 (rtcB_1)
Prokaryotic type
tRNA splicing ligases
NQZ70_01818 (rtcB_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
WCQ89131
LinkDB
All DBs
Position
complement(2458049..2459215)
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AA seq
388 aa
AA seq
DB search
MGPAQIKGKNVDIRLWTRPEEVEPVALEQLRNISALPWVFHHVAAMPDVHFGKGATVGSV
IAMRDAVAPAAVGVDIGCGMGALRTNLTAADLPDDLKRLRSDLERAIPVGFAAHDTPLKG
FAGLPLWDEFASLTPKVQGLFTKARCQLGTLGGGNHFIELCLDTDGGVWLMLHSGSRNIG
KELAEIHIATAKKLAHNRDLPDRELAVFLAGTPEMKAYRRDLFWAQRYARANREAMFHLA
EGVLRRHFPQLEIQEAIYCHHNYVAEEIHFGEEVLVTRKGAIRAGKGELGIIPGSMGTRS
YIVRGLGNPEAFESASHGAGRKMSRGEAKRRFTTKDLAAQTAGVECRKDGGVLDEIPSAY
KPIERVMEDQRDLVEIVAELRQVLCVKG
NT seq
1167 nt
NT seq
+upstream
nt +downstream
nt
atgggaccggcgcagatcaagggcaagaacgtggacatcaggctgtggacccggccggag
gaggtcgagccggtcgcgctggagcagctgcgcaacatcagcgccctgccctgggtgttc
caccacgtcgccgcgatgcccgacgtccacttcggcaagggcgcgaccgtcggctcggtc
atcgccatgcgggacgccgtcgcgcccgccgccgtcggcgtcgacatcggctgcggcatg
ggcgcgctccgcacgaacctcaccgcggccgacctgcccgacgacctcaagcggctccgg
agcgacctcgagcgggcgatccccgtcgggttcgccgcccacgacacgccgctcaagggg
ttcgcgggcctgccgctctgggacgagttcgcgagcctgaccccgaaggtccaggggctg
ttcacgaaggcgcgctgtcagctcggcacgctcggcggcggcaaccacttcatcgagctc
tgcctcgacacggacggcggcgtgtggctgatgctccactccggctcgcgcaacatcggc
aaggagctcgccgagatccacatcgccacggcgaagaagctcgcccacaaccgagacctg
cccgaccgcgagctcgcggtcttcctcgccggcaccccggagatgaaggcctaccggcgc
gacctcttctgggcgcagcgctacgcccgcgcgaaccgcgaggccatgttccacctcgcc
gagggcgtcctccggcggcacttcccgcagctcgagatccaggaagccatctattgccat
cacaactacgtggcagaagagatccatttcggcgaggaggtgctcgtgacgcgcaagggc
gcgatccgcgccggcaagggcgagctcggcatcatccccggctcgatgggcacgcgctcc
tacatcgtccgcggcctcggcaaccccgaggcgttcgagagcgcgtcgcacggcgcgggc
cgcaagatgagccgcggcgaggcgaagcggcgcttcaccacgaaggaccttgccgcgcag
acggccggcgtcgagtgccgcaaggacggcggcgtcctcgacgagatcccctccgcctac
aagccgatcgagcgcgtcatggaggaccagcgcgatctcgtggagatcgtcgcggagctc
cggcaggtcctgtgcgtgaaggggtga
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