Sorangium sp. So ce836: NQZ70_03250
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Entry
NQZ70_03250 CDS
T11263
Symbol
rnjA
Name
(GenBank) Ribonuclease J1
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
sorg Sorangium sp. So ce836
Pathway
sorg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sorg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NQZ70_03250 (rnjA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sorg03019
]
NQZ70_03250 (rnjA)
Messenger RNA biogenesis [BR:
sorg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NQZ70_03250 (rnjA)
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B
RNase_J_C
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_3
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
WCQ90539
LinkDB
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Position
complement(4365549..4367192)
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AA seq
547 aa
AA seq
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MGVRIIPLGGLGEVGMNAMLIEEDGRRVLVDCGVMFPNDQVLGVEVAIPDLSYVREAGGV
DAVIVTHGHEDHIGGLPSLLREFPVPVYGTRFTLRLVRERLLEHGIDVPLREVEPQQHFT
AGPFRAEPLRVTHSIPDAVGYAIETGEGILIHTGDYKIDLTPVGGERLDLGRFAEYGRAG
VAALLSDSTNSERDGWSVSETAVAEGFLRPFREAKGRILVALFASNVHRVQSVLDLAAQL
GRKVVLAGRSLATNTRIAQEIGILTIPPGVLVDDATAATLPPARLIVLASGAQGEPNSAL
ARMAVGDHHRLRVDPGDTVIFSSRAIPGNEIAVSQLANRLARRGAVVLDRGLDPIHASGH
AQAEEQKVLLDAVRPEHFVPIHGEYRMLLAHARTALRMGVPASGVFVVEDGESLVVEDGR
MRLGDAVKTGRVWLDARGGLDVSEIVLREREQISDQGLVMVLVVADRKTGEVLRGPELLG
RGVAHFEEGGPLFVAALESARDALAALSPAARTLAPALEDALSRGVRRVFRREASRRPAV
LPLAVLL
NT seq
1644 nt
NT seq
+upstream
nt +downstream
nt
atgggagtccggatcattcctctcggcggcctcggcgaggtcgggatgaacgcgatgctg
atcgaggaggatggccgccgcgtgctcgtcgactgcggcgtcatgttccccaacgaccag
gtgctcggcgtcgaggtggcgatccccgacctcagctacgtgcgcgaggcgggcggggtc
gacgcggtgatcgtgacgcacggccacgaggatcacatcggcgggctgccgtcgctgctg
cgcgagttcccggtccccgtgtacgggacgcgcttcaccctccggctcgtgcgcgagcgc
ctcctcgagcacggcatcgacgtgccgctccgcgaggtcgagccccagcagcacttcacg
gcgggcccgttccgcgccgagcccctgcgcgtgacccactccatccccgatgcggtcggc
tacgcgatcgagacgggcgagggcatcctcatccacaccggcgattacaagatcgatctc
acccccgtgggcggcgagcggctcgatctcggccgcttcgccgagtacggccgcgccggc
gtggcggccctcctgtccgactccaccaactccgagcgcgacggctggtcggtgagcgag
accgcggtggccgaggggttcctccggccgtttcgcgaggccaagggccgcatcctcgtc
gcgctgttcgcctccaacgtccaccgggtccagagcgtcctcgacctcgccgcccagctc
ggccgcaaggtcgtgctcgccgggcgcagcctcgcgacaaacacgcggatcgcccaggag
atcggcatcctgaccatcccccccggcgtgctcgtcgacgacgccaccgcggccacgctc
ccgcccgcgcgcctcatcgtgctcgcctcgggcgcgcagggcgagccgaacagcgcgctc
gcgcgcatggccgtcggcgatcaccaccggctgcgggtcgacccgggcgacacggtgatc
ttctcgtcccgcgccatccccggcaacgagatcgccgtcagccagctcgccaaccgcctg
gcgaggcgcggcgccgtggtgctcgatcgcggcctcgacccgatccatgcgagcggccac
gcccaggcggaggagcagaaggtgctcctcgacgcggtccggccggagcacttcgtcccg
atccacggcgagtaccggatgctgctcgcccacgcgcgcacggcgctccggatgggcgtg
ccggcgtcgggggtcttcgtggtcgaggacggcgagtcgctggtcgtcgaggacggccgg
atgcggctcggggacgcggtgaagaccgggcgcgtgtggctcgacgcgcgcggcgggctc
gacgtctccgagatcgtgctgcgcgagcgcgagcagatctcggatcagggcctcgtgatg
gtgctggtcgtggccgaccgcaagacgggcgaggtcctgcgcggccccgagctcctgggg
cgcggggtggcgcatttcgaggaaggcggcccgctgttcgtggccgcgctcgagagcgcg
cgcgacgcgctcgcggcgctgtcgccggcggcgcgcacgctggcgccggcgctggaggac
gcgctcagccgcggcgtgcggcgggtgttccggcgcgaggcgtcgcgccgccccgccgtg
ctccccctggccgtgctcctgtga
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