Sorangium sp. So ce836: NQZ70_04438
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Entry
NQZ70_04438 CDS
T11263
Symbol
ligD
Name
(GenBank) Multifunctional non-homologous end joining protein LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sorg Sorangium sp. So ce836
Pathway
sorg03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sorg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
NQZ70_04438 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sorg03400
]
NQZ70_04438 (ligD)
Enzymes [BR:
sorg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
NQZ70_04438 (ligD)
DNA repair and recombination proteins [BR:
sorg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
NQZ70_04438 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
WCQ91715
LinkDB
All DBs
Position
complement(6088737..6090986)
Genome browser
AA seq
749 aa
AA seq
DB search
MVGQRQARSAARRTQDERPLPPTARRRRGASSTDVDVLRSSAAKGQTDGAAAAPRRTLTY
ADALDGARRGTFPDEVEPQLATLVTGPPQGEGWLYEVKFDGYRMLAQLRGGRVTLLTRRG
QDWTERFASVRDDLARLPAREAVLDGEIVIVGPDGVTDFQALQNALSDGNDGREGRLMYF
VFDLLYLDGRDLRDCAQVTRKRALKALLEEAPEEGTLRYTEHLEEDGAAVFQHACKLGIE
GVIAKRPEAPYRSGRGNSWLKVKCGKRQEFVIVGFTEPSGARQGLGAILVGVNRLGKLAY
AGKVGTGFTSKTLTTLRSRLESIERAKPAFAGAPRMRGVHWVEPKLLAEVQFSAWTRDGR
LRHPSFEGLREDRTPESVIVEREQPPPAPPPRKAAGASSKAATAARSKGASAAAGKAVSA
AARRAAGTTPGKAAGAAAIEASGKAPRGGRGGADRIEVAGTRLTNPDKVLYPAQGITKLA
LARYYAQVAEHMLPYVAKRLLTLVRCPAGQGKPCFFQRHEAEGLSEAIRRTLVEEDDGKR
TYLYIESTEGLVSLVQMGALEMHIWGSRVDRIEQPDMMVFDLDPAPELPWERVAEAAKTV
RRLLETLGLRSFVKTTGGKGLHVVVPIEARRRWDEVKPFTKAVADALVRFDPARYIATLS
KAKRTGKVFVDYLRNGRGATAVAPYSTRARPGAAVATPLSWDELDAPLDPASFTIETVPQ
RLATIADPWAELPTVRQSITSAMMKQVGL
NT seq
2250 nt
NT seq
+upstream
nt +downstream
nt
atggtcggacagagacaagcgcgaagcgcggcgcggcggactcaggacgagcggccccta
cccccgacagcccgccgcagacgcggcgcgagctcgacggacgtggacgtcctgcgctcg
tccgccgcgaagggacaaacggacggcgccgccgcggccccgcgccggacgctgacctac
gcggatgcgctcgatggcgcccggagagggacgttcccggacgaggtcgaaccccagctc
gcgacgctcgtcaccgggcctccccagggcgaagggtggctctacgaggtcaagttcgac
ggttaccggatgctcgcgcagctccgcggcggccgcgtgacgctcctgacccgccgcggc
caggactggaccgagcggttcgcgagcgtgcgcgacgacctcgcccgattgccagcccgg
gaagccgtgctggacggcgagatcgtcatcgtcgggcccgatggcgtgaccgatttccag
gccctgcagaacgcgctcagcgacggaaatgatgggcgcgaggggcgcctcatgtacttc
gtgttcgacctgctctacctggacggccgcgatctccgcgactgcgcgcaggtcacccgc
aaacgggcgctcaaggcgctgctggaggaagcgccggaggaagggacgctgcgctacacg
gagcacctcgaggaggacggcgccgccgtgttccagcacgcgtgcaagctcgggatcgag
ggcgtcatcgcgaagcgcccggaggctccctaccggagcgggcgcgggaacagctggctc
aaggtgaagtgcggcaagcgccaggagttcgtgatcgtcggattcaccgagccgtccggg
gcccgccaggggctcggggccatcctcgtcggcgtgaacagattaggcaagctcgcctac
gccggaaaggtcggcacgggcttcacgagcaagacgctcacgaccctgcgcagccgtctc
gagtcgatcgagcgcgccaagccggcgttcgcaggggcgccgcgcatgcgcggcgtgcac
tgggtcgagcccaagctcctcgccgaggtccagttctccgcctggacgcgcgacgggcgg
ctgcggcacccgtcgttcgagggcctccgcgaggaccgcaccccggagtcggtcatcgtc
gagcgcgagcagcccccgccggcgccgccgccccgcaaggcggccggcgcgtcgagcaag
gcggcaaccgcggccaggagcaagggggcgagcgcggcagccggcaaggcggtgagcgcg
gccgcgcgcagggccgcgggcacgacgcccggcaaggcggccggggcggcggcgatcgag
gcgtcgggcaaggcgcctcgcggcggccggggcggcgccgacaggatcgaggtcgcggga
acgcggctgacgaaccccgacaaggtgctctatccagcgcaggggatcacgaagctcgct
ctcgcccggtattacgcgcaggtcgccgagcacatgctgccctatgtcgcaaagcggctg
ctgacgctggtccgctgccccgcgggccagggcaaaccgtgcttctttcagaggcacgag
gccgaggggctctcggaggccatccggcggacgctcgtcgaagaggacgacggaaaacga
acgtatctctacatcgagagcacggaagggctggtgtcgctcgtgcagatgggggcgctc
gagatgcacatctgggggagccgcgtcgaccggatcgagcagccggacatgatggtcttc
gacctcgacccggcgccggagctcccctgggagcgcgtggcggaggccgcgaagaccgtg
cggcgcctcctggagacgctggggctgcggagcttcgtcaagacgaccggcggcaaaggg
ctccacgtggtggtcccgatcgaggcgcgcaggcgctgggacgaggtgaagccgttcacg
aaggccgtggccgacgcgctcgtgcgcttcgatccggcgcggtacatcgcgacgctctcg
aaggccaagcgcaccggcaaggtcttcgtcgactacctgcggaacgggcgcggcgcgacc
gccgtggcgccgtactcgacccgcgcgcgccccggcgcagcggtggcgacgccgctctcg
tgggacgagctcgacgcgccgctcgatcccgcctcgttcaccatcgagaccgtgccgcag
cgcctcgcgaccatcgcagatccgtgggccgagctcccgaccgtgcggcagtccatcacc
agcgccatgatgaagcaggtcgggctctga
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