Sorangium sp. So ce836: NQZ70_04620
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Entry
NQZ70_04620 CDS
T11263
Symbol
rtcB_3
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
sorg Sorangium sp. So ce836
Brite
KEGG Orthology (KO) [BR:
sorg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sorg03016
]
NQZ70_04620 (rtcB_3)
Enzymes [BR:
sorg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
NQZ70_04620 (rtcB_3)
Transfer RNA biogenesis [BR:
sorg03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
NQZ70_04620 (rtcB_3)
Prokaryotic type
tRNA splicing ligases
NQZ70_04620 (rtcB_3)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
WCQ91893
LinkDB
All DBs
Position
6338396..6339523
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AA seq
375 aa
AA seq
DB search
MSARIAAWLPDGAGAALDASLARLARTEDVAHVAVMPDAHVADDVCVGTVTATTRRLLPA
AVGGDIGCGMVALRLRAGADLLADRDRAARLLSGLCRRVPHVLHPAAGAPPLPDDLAEAR
LGAPRLEAMKRREGRMELGTLGRGNHFLEVQRDEEGALWLLLHSGSRAMGPAIREHHEAL
AARDPSGIRFLEADSEAGRAYLADAAWAASYARASRARMAAEAAGLFAELFGVEVDAPSR
IEVDHNHVRREEHGGRALWVHRKGAMGLREGELGVVPGSMGSPSFHVAGRGHPDALGSSA
HGAGRALPRGEARRRIGARQLLREAEGVWFDHRLADRLREEAPSAYKDIGAVMRAQRALV
RVVRRLRPVLVYKAP
NT seq
1128 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgcgcgcatcgccgcgtggctcccggacggcgcgggcgcggcgctcgacgcctcg
ctcgcgcggctcgcgcgcaccgaggacgtcgcgcacgtcgcggtgatgcccgacgcgcac
gtggccgacgacgtgtgcgtcggcacggtgaccgccacgacccgccgcctcctgccggcg
gcggtcggcggcgacatcgggtgcggcatggtcgcgctgcggctccgcgcgggcgccgat
ctgctcgcggatcgcgaccgcgcggcgcggctcctctcggggctctgccgccgcgtcccg
cacgtcctgcacccggccgccggcgccccgccgctgccggacgacctcgccgaggcgcgg
ctcggcgcgccgcggctcgaggcgatgaagcgccgcgagggccgcatggagctcggcacg
ctcggccggggaaaccatttcctggaggtgcagcgcgacgaggagggcgcgctgtggctg
ctcctgcacagcggctcgcgcgccatggggccggcgatccgggagcaccacgaggcgctc
gcggcgcgcgatccctcggggatccgcttcctcgaggccgacagcgaggccgggcgcgcg
tacctcgccgacgcggcgtgggccgcgagctacgcgcgggcgagccgcgcccggatggcg
gccgaggccgcggggctcttcgccgagctgttcggcgtcgaggtcgacgcgccgtcgcgc
atcgaggtcgatcacaaccacgtccggcgcgaggagcacggcgggcgcgcgctctgggtg
caccgcaagggcgccatggggctccgcgagggcgagctgggcgtcgtgcccgggtcgatg
gggagcccgagcttccacgtggcggggcgcggccaccccgacgcgctcgggtcgtcggcg
cacggcgccgggcgcgcgctgccgcggggcgaggcgcgccgccgcatcggcgcgcggcag
ctgctgcgggaggccgagggcgtgtggttcgatcatcgcctcgccgaccggctccgcgag
gaggcgccctcggcctacaaggacatcggcgcggtcatgcgggcgcaacgcgcgctcgtg
cgcgtcgtccgccggctccggccggtgctcgtctacaaggcgccgtga
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