Sorangium sp. So ce836: NQZ70_08506
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Entry
NQZ70_08506 CDS
T11263
Symbol
rtcB_5
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
sorg Sorangium sp. So ce836
Brite
KEGG Orthology (KO) [BR:
sorg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sorg03016
]
NQZ70_08506 (rtcB_5)
Enzymes [BR:
sorg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
NQZ70_08506 (rtcB_5)
Transfer RNA biogenesis [BR:
sorg03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
NQZ70_08506 (rtcB_5)
Prokaryotic type
tRNA splicing ligases
NQZ70_08506 (rtcB_5)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
GARP
Motif
Other DBs
NCBI-ProteinID:
WCQ95729
LinkDB
All DBs
Position
11531691..11532917
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AA seq
408 aa
AA seq
DB search
MERSYNVIPTDSGVPIKAWTVGVPFEPAAEAQLKNIAALPFIHKWIAVMPDAHQGIGATV
GSVVATHGAVIPAAVGVDIGCGMMAARTSLRASDLPDSLRGLRTAIEGAVPHGRTDNGGK
NDRGAWRSPPPAQLEAWAALEPRYRQIVEKHPRLGRGSAIEHLGTLGTGNHFIELCLDED
DRVWVMLHSGSRGVGNRVGSYFIELAKQEMRRFFVNLPDANLAYLPEGTRHYHDYMQAVS
WAQDFAAVNRELMMAQVVGALRASGELPPFDAAVEAVNCHHNYVAREHHYGKDVLVTRKG
AVRARAGDLGIIPGSMGARSFIVRGLGNPESFCSSSHGAGRVMSRTEARRRVTVAEHEAA
TAGVECRKDEAVIDETPAAYKPIDDVMRAQRDLVEIVHTLRQVVCVKG
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atggagcgaagctacaacgtcatccccacggactcgggcgtgcccatcaaggcgtggacg
gtcggcgtgccgttcgagcccgccgccgaggcgcagctcaagaacatcgccgcgctgccg
ttcatccacaagtggatcgccgtgatgcccgacgcccaccagggcatcggcgcgacggtg
gggagcgtcgtcgcgacgcacggcgcggtcatcccggcggccgtcggcgtcgacatcggc
tgcgggatgatggcggcgcgcacgagcctccgcgcgtcggacctgccggactcgctgcgc
gggctccggaccgccatcgagggggcggtgccgcacggccgcaccgacaacggcgggaag
aacgaccgcggcgcgtggcgctcgcccccgccggcccagctcgaggcgtgggccgcgctc
gagccgcggtaccggcagatcgtcgagaagcacccgcgcctcgggcgcggctcggccatc
gagcacctcggcacgctcgggaccggcaaccacttcatcgagctctgcctcgacgaggac
gaccgcgtctgggtgatgctgcacagcgggtcgcgcggggtcggcaaccgcgtcgggagc
tacttcatcgagctcgccaagcaggagatgaggcgcttcttcgtgaacctgcccgacgcg
aacctcgcctacctgccggaggggacgaggcattaccacgactacatgcaggcggtgtcg
tgggcgcaggacttcgcggccgtgaaccgggagctgatgatggcgcaggtggtgggcgcg
ctccgcgcgtcgggcgagctgccgcccttcgacgcggccgtcgaggcggtgaactgccac
cacaactacgtggcgcgcgagcaccactacggaaaggacgtcctcgtgacgcgcaagggc
gccgtgcgcgcgcgggcgggcgatctcgggatcatcccgggcagcatgggcgcgcgctcg
ttcatcgtccgcgggctcggcaacccggagagcttctgcagctcgagccacggcgcgggc
cgcgtgatgtcgcggaccgaggcgcgccgccgcgtcaccgtcgccgagcacgaggccgcg
accgccggcgtcgagtgccgcaaggacgaggccgtgatcgacgagacgccggccgcgtat
aagccgatcgacgacgtgatgcgggcgcagcgggacctcgtcgagatcgtccacacgctg
cggcaggtcgtgtgcgtgaaggggtga
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