Streptococcus oriscaviae: INT76_00580
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Entry
INT76_00580 CDS
T08170
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
sos
Streptococcus oriscaviae
Brite
KEGG Orthology (KO) [BR:
sos00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sos03009
]
INT76_00580 (rlmD)
Enzymes [BR:
sos01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
INT76_00580 (rlmD)
Ribosome biogenesis [BR:
sos03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
INT76_00580 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_15
TRM5-TYW2_MTfase
Methyltransf_31
Cons_hypoth95
Methyltransf_25
RrnaAD
N6_N4_Mtase
MTS
Methyltransf_4
PCMT
DOT1
Motif
Other DBs
NCBI-ProteinID:
QUE54430
LinkDB
All DBs
Position
117451..118821
Genome browser
AA seq
456 aa
AA seq
DB search
MIRKNDVVEVEIVDLTHEGQGVAKLDGFVFFVDNALPGEKIAMRVLKVKKTVGFGKVERY
LTLSPERNQDIELTYLRTGIADLGHMTYPAQLAFKKKQVVNSLRKIAGLTDLPVADTLGM
NDPIRYRNKAAVPVRRVNGLLDTGFFRKNSHDVIPIEDFYIQHPEIDQLIAYTRDQLRRL
DLKPYDEKEQTGLIRSLVVRRGHYSGQLMLILVTTRPKIFRVDSLVERLTAAFPNLVSIL
QNINDQQTNAILGKEFCLIYGQETIVDTMLGNEFEISAPSFYQVNTEMAEKLYQTAIDFS
EVGPDDVVIDAYSGIGTIGLSFAKQVKHVYGVEVIPEAVADSLKNAERNGISNVTYLCDS
AENAMAKWAKEGVQPTVIVVDPPRKGLTESFVKASASVQPEKITYISCNVATMARDIKLY
QELGYKLTKVQPVDLFPQTHHVEAVSLLVRVDLSAK
NT seq
1371 nt
NT seq
+upstream
nt +downstream
nt
atgattaggaaaaacgatgttgtagaagttgaaattgttgatttgacccatgaaggacaa
ggagttgctaagctagatggatttgtcttttttgtggacaatgccctaccgggtgagaaa
attgccatgcgggtgctcaaggtcaaaaaaacggttggttttggaaaggtagaacgctat
ctgaccctctctccggagcgtaatcaggatattgaactgacgtatttgcgtacaggaatt
gctgatttgggccacatgacctatccagcccaactggctttcaagaagaaacaggtcgtc
aatagtctgcgaaagatagcgggtctgacagaccttcctgtggctgatactctgggtatg
aatgacccaatccgctatcgcaataaggcagccgttcctgttcgtcgggtcaatggactc
ttagacacaggttttttccgcaaaaattctcacgatgtgattccgattgaagatttttac
atccagcacccagagattgatcagctgattgcttatacgcgtgatcagttgaggcgactt
gacctcaaaccctacgatgaaaaggagcaaacagggctcatccgaagtctggtggtgcgt
agagggcactactctggtcaactgatgctcattttggtcacgactcgtccgaaaatcttc
cgtgtagacagtttagtagagcgcttgactgcggcctttcccaatctggtttctatcctt
caaaatatcaacgaccaacaaaccaacgccattttagggaaggaattctgtctgatctat
ggtcaagaaaccattgtagataccatgctgggaaatgagtttgagatttcggctccctcc
ttttatcaggttaatacggagatggcggaaaaactgtatcagacggctattgacttttct
gaggtcgggcctgatgatgtcgtgattgatgcctattctggcattggaacgattggtctg
tccttcgccaaacaggtcaaacacgtttatggagttgaggttattccagaagcggttgcc
gattctttgaaaaatgcagagcgaaatggtatttcaaacgtgacctacctttgcgacagt
gcggaaaatgccatggccaaatgggctaaagaaggagttcaaccgaccgtgattgttgtt
gatccacctcgcaaaggcttaacagaatcctttgtcaaggctagcgcctctgttcagcct
gaaaagattacttacatctcttgcaatgtagctaccatggcgcgtgatattaaactctat
caagaacttggctacaaactgaccaaggttcagcctgtggacttatttccgcagacgcat
catgtggaggcagtatcactgcttgtacgagttgatttatcagcaaagtag
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