Streptococcus oriscaviae: INT76_05855
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Entry
INT76_05855 CDS
T08170
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
sos
Streptococcus oriscaviae
Pathway
sos03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sos00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
INT76_05855
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sos03019
]
INT76_05855
Messenger RNA biogenesis [BR:
sos03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
INT76_05855
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
pre-PUA_NIP7
DUF4453
Permuted_GreAB-C
Motif
Other DBs
NCBI-ProteinID:
QUE53407
UniProt:
A0ABX7YI01
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Position
1158941..1160620
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AA seq
559 aa
AA seq
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MSSVNLKPQEVGVFAIGGLGEIGKNTYGIEYQDEIIIVDAGIKFPEDELLGIDYVIPDYS
YIVDNLDRVKGLVITHGHEDHIGGIPFLLKQANIPIYAGPLALALIRGKLEEHGLLRDAT
LHEINHKTELTFKKLKISIFRTTHSIPEPLGVVIDTPQGKIVCTGDFKFDFTPVGEPADL
HRMAALGEEGVLCLLSDSTNAEVPTFTNSEKVVGQSIMKLIEDIHGRIIFASFASNIFRL
QQAADAAVKTGRKIAVFGRSMEKAIVNGIELGYIKVPKGTFIEPNEIKEYPASEIMILCT
GSQGEPMAALSRIAHGTHRQVQLQPGDTVIFSSSPIPGNTTGVNKLINILIEAGVEVIHG
KINNIHTSGHGGQQEQKLMLRLIKPKFFMPVHGEYRMQKIHAGLAVDTGVPKENIFIMEN
GDVLALTKKTARIAGHFNAQDIYVDGNRIGEIGAAVLKDRRDLSEDGVVLAVATVDFQSQ
MILAGPDILSRGFIYMRESGELIRESQRVLFNAIRIALKNKDANIQTLNGAIVNALRPFL
YEKTEREPIIIPMILTPDK
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcagtcaatctaaaacctcaagaagttggcgtttttgccatcggtggtttggga
gaaatcgggaagaacacttacggcattgaataccaagatgaaattatcatagtggatgct
ggtatcaaattccctgaagatgaactactgggcattgactacgttatccctgactactct
tatatcgtcgacaatctggatcgagtaaaaggcttggtcattacccatggtcacgaagac
catatcggcggaattcccttcctcctcaaacaagccaacatccctatctacgccggtcct
cttgctcttgccctcatccgaggcaagttagaagaacacggcctcttacgggatgcgacc
cttcacgaaatcaaccacaagacagagctgactttcaagaaactcaaaattagcatcttc
cgcaccactcactctatcccagagcccttaggtgtggtcattgacaccccgcagggcaag
attgtctgcacaggcgacttcaagtttgacttcactcccgttggtgaacctgcagacctc
caccgcatggccgctctcggagaagaaggcgtcctttgcttgctctcagactcgaccaat
gctgaggtgccgacctttaccaattctgaaaaggtcgtcggtcaatctattatgaagtta
atcgaagacattcacggtcggatcatcttcgcatcctttgcctccaacatcttccgtctc
cagcaagcagcagatgccgctgtcaaaactggtcgtaagattgcagtctttggccgttcg
atggaaaaggccattgttaacgggatcgaactgggctatatcaaggttccaaaaggcacc
tttattgagcctaatgaaatcaaggaataccctgccagcgaaatcatgattctctgtacg
ggaagccaaggagagccaatggctgccctctctcgtatcgctcatggtacccaccgtcag
gttcagctccagcccggagatacagtcatcttctcctcaagccctattccaggaaatacc
actggcgttaacaaacttatcaacattctgattgaagctggggttgaggtcatccacggc
aagattaacaacatccacacctctggacacggtggtcagcaggaacaaaaactcatgctc
cgcctcattaaaccaaaattcttcatgcctgttcacggagagtaccgcatgcagaaaatc
catgcaggtctggcggttgatactggtgttccgaaggaaaacatcttcatcatggaaaac
ggggacgttctagccctaactaaaaaaactgcccgcattgccggccatttcaatgcacaa
gacatctatgtcgatggcaatcgcattggcgaaatcggcgctgctgtcctcaaggatcgt
agagatttatcagaagacggtgttgtccttgctgtcgcaacagtggacttccaatcccag
atgattcttgccggcccagatattctcagccgtggcttcatctatatgcgcgaatctggc
gaactcatccgagaaagccagcgcgtcctcttcaacgctatccgtatcgccctcaaaaat
aaggatgccaacatccaaaccctaaacggcgctattgtcaacgccctcagacccttctta
tatgaaaaaaccgagcgtgaacccatcattattccgatgatactcactcccgataaatga
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