Streptococcus oriscaviae: INT76_06245
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Entry
INT76_06245 CDS
T08170
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sos
Streptococcus oriscaviae
Pathway
sos03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sos00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
INT76_06245 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sos03021
]
INT76_06245 (rpoC)
03400 DNA repair and recombination proteins [BR:
sos03400
]
INT76_06245 (rpoC)
Enzymes [BR:
sos01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
INT76_06245 (rpoC)
Transcription machinery [BR:
sos03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
INT76_06245 (rpoC)
DNA repair and recombination proteins [BR:
sos03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
INT76_06245 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
QUE53477
LinkDB
All DBs
Position
complement(1232381..1236016)
Genome browser
AA seq
1211 aa
AA seq
DB search
MVDVNRFKSMQITLASPNKVRSWSYGEVKKPETINYRTLKPERDGLFDEVIFGPTKDWEC
SCGKYKRIRYKGIVCDRCGVEVTRAKVRRERMGHIELKAPISHIWYFKGIPSRMGLTLDM
SPRALEEVIYFAAYVVIDPKDTPLEHKSIMTEREYRERLREYGHGSFVAKMGAEAIQDLL
KQVDLPTEIAALKEELKTATGQKRIKAVRRLDVLDAFQKSGNKPEWMILNILPVIPPDLR
PMVQLDGGRFAASDLNELYRRVINRNNRLARLLELNAPGIIVQNEKRMLQEAVDALIDNG
RRGRPITGPGSRPLKSLSHMLKGKQGRFRQNLLGKRVDFSGRSVIAVGPTLKMYQCGVPR
EMAIELFKPFVMREIVAREIAGNMKAAKRLIERGDDRIWDILEEVIKEHPVLLNRAPTLH
RLGIQAFEPVLIDGKALRLHPLVCEAYNADFDGDQMAIHVPLSEEAQAEARILMLAAEHI
LNPKDGKPVVTPSQDMVLGNYYLTMEDAGREGEGMVFKDADEAVMAYRNGYVHLHTRVGI
ATDSLDKPWKDNQKHKIMMTTVGKILFNAIMPEGLPYLQEPNNANLTDGTPDKYFLEPGS
DIKAAIVALPLNQPFKKKNLGNIIAEIFKRFRTTETSALLDRLKDLGYYHSTLAGLTVGI
ADIPVIDNKAEIIEESHERVEQIKKQFRRGMITEDERYAAVTDEWRSAKEKLEKRLVEKQ
DPKNPIVMMMDSGARGNISNFSQLAGMRGLMSAPNGRIMELPILSNFREGLSVLEMFFST
HGARKGMTDTALKTADSGYLTRRLVDVAQDVIIREDDCGTDRGLDITSITDGKEMIEPLE
ERLQGRYTKKTVKHPETGAVIIGPNQLITEDIAREIVNAGVKQVTIRSVFTCNTRHGVCR
HCYGINLATGDAVEVGEAVGTIAAQSIGEPGTQLTMRTFHTGGVASNSDITQGLPRVQEI
FEARNPKGEAVITEVKGEVTAIKEDAATRTKKVFVKGKTGEGEYVVPFTARMKVDVGDQV
ARGAALTEGSIQPKRLLEVRDVLSVETYLLSEVQKVYRSQGVEIGDKHIEVMVRQMLRKV
RVMDPGDTDLLMGTLMDITDFTDANAEVVIAGGIPATARPVLMGITKASLETNSFLSAAS
FQETTRVLTDAAIRGKKDHLLGLKENVIIGKIIPAGTGMARYRNLEPQAVNEVEIIEDIV
AEEVAEELVTD
NT seq
3636 nt
NT seq
+upstream
nt +downstream
nt
gtggttgacgtaaatcgttttaaaagtatgcaaatcacgttagcttcaccgaacaaggtc
cgttcatggtcctatggtgaagttaaaaaacctgaaacaatcaactatcggacactcaag
ccagagcgcgacggactctttgatgaagtcatctttggtccaaccaaggactgggagtgt
tcatgtgggaagtacaaacggattcgctataagggaattgtttgtgaccgctgtggtgta
gaagtgactcgggctaaagttcgccgtgagcggatgggtcacatcgagttgaaggcacct
atttcacatatctggtatttcaaagggattccaagccgcatgggcttgaccttggatatg
agcccacgggcgcttgaggaagtcatctacttcgctgcctatgtggtcattgatccaaag
gatactccgcttgagcacaagtctattatgacagagcgtgaatatcgtgagcgcctgcgc
gagtatggccatggttcttttgtcgctaagatgggggcagaagctatccaagacttgctc
aaacaagtggatcttccaactgaaatcgcagctctcaaggaagagttgaagactgcaact
ggtcaaaaacggatcaaggcagttcgccgtctggatgtcttggacgccttccaaaaatca
ggcaacaagccagaatggatgattctcaatatcctacctgttattccaccggatttgcgt
ccgatggtccagttggatggtggccgctttgctgcctctgacctgaatgaactctaccgc
cgtgttatcaaccggaacaaccgtttggcccgcctcttggaactcaatgcgccaggcatc
atcgtgcaaaacgaaaaacggatgctccaagaagcggtggatgctttgattgataacggt
cgccgtggtcgtccaatcacaggaccaggtagccgtccccttaaatccctcagccacatg
ctgaaagggaagcaggggcgtttccgccaaaacttgctcggtaagcgtgttgacttctca
ggtcgttccgttatcgccgttggtccaactctcaagatgtaccaatgtggtgtgccacgt
gaaatggccatcgagctcttcaaaccctttgtcatgcgcgaaatcgttgcccgcgaaatc
gctggtaacatgaaagctgccaaacgcttgattgagcgtggcgacgaccgtatttgggat
attctagaagaagtcatcaaagaacaccctgtgctcctcaaccgcgcaccgaccctccac
cgtttgggtattcaggcctttgaaccagtcctgattgatggtaaggctcttcgcctccac
ccattggtctgtgaagcctacaacgccgactttgacggtgaccagatggcgattcacgtt
ccattgtcagaagaagcgcaggcagaagctcgtatcctcatgctggctgctgagcacatc
cttaacccgaaagatggtaaaccagttgtaaccccatctcaggatatggtcttggggaac
tactacttgaccatggaagatgccggccgtgaaggcgaaggcatggtcttcaaggatgcg
gatgaggctgtcatggcttaccgcaatggctatgttcacttgcatacccgtgttggtatc
gcaacggacagtcttgacaaaccttggaaggacaatcaaaagcacaagattatgatgacc
actgtcggaaaaatcttgttcaacgcgattatgccagaagggcttccttacttgcaagag
ccaaacaatgccaacttgacagatggaacgccagacaaatacttcttggaaccaggttca
gacatcaaggctgccattgtagcattgccactcaaccaaccgttcaagaagaaaaatctt
ggaaacatcatcgctgaaatcttcaagcgtttccgtacaacagaaacctcagccctgctt
gaccgtcttaaagacctgggttactatcactccacccttgctggtttgacagtggggatt
gccgatatcccagttatcgacaacaaggcagaaatcattgaagaatctcatgaacgtgta
gagcaaatcaagaaacaattccgccgcggtatgatcacagaagatgagcgttatgcagcg
gtgactgacgaatggcgttctgccaaggaaaaattggaaaaacgcctggttgaaaaacag
gatccgaagaacccaatcgttatgatgatggactctggtgcccgtggtaacatatccaac
ttctcccagttggccggtatgcgtggactcatgtctgctccgaacggacgaatcatggaa
ttgccaatcctgtctaacttccgcgaaggtctctccgtactcgagatgttcttctctact
cacggtgcccgtaagggtatgacggatacggccttgaagacggccgactcaggttacttg
actcgtcgtttggttgacgtggcccaagatgtcattattcgtgaggacgactgtggtact
gaccgtggtttggacatcacctctatcaccgatggcaaagagatgatcgagccattggaa
gagcgtctgcaaggtcgttacaccaagaagaccgttaagcatcctgaaactggtgcggtt
atcatcggtccaaatcagctgattaccgaagatattgctcgtgaaattgtcaacgctggt
gtgaaacaagtaaccatccgtagcgtatttacatgtaacactcgtcacggtgtctgccgt
cactgttacggtatcaacttggcaacaggtgatgcggttgaagtgggtgaagcagtcggt
acaatcgctgcccaatccatcggtgagcctggtacccagctgaccatgcgtaccttccac
acgggtggtgtagcctcaaacagcgacatcactcagggtcttcctcgtgtccaagaaatc
tttgaagcccgtaatccgaaaggggaagcggtcatcacagaggtcaagggtgaagtcaca
gctatcaaagaagatgcagcaacccgcaccaagaaagtctttgtcaaaggcaagactggt
gaaggcgaatatgtggtgccatttacagcccgcatgaaggttgatgttggtgaccaagtg
gcgcgtggagcagccctgacagaggggtctatccagccaaaacgcctgcttgaagtacgc
gacgtcttgtctgtggaaacctaccttctttctgaagtgcaaaaggtttaccgtagccaa
ggggtagaaatcggcgacaagcacatcgaggtaatggtgcgtcaaatgcttcgtaaagtt
cgtgtcatggatccaggagatacagaccttcttatgggaactcttatggacatcactgac
tttacagatgccaatgctgaagtggttatcgcaggaggaattccagcaactgctcgtcca
gtcctcatgggtatcaccaaggcttcccttgaaaccaactccttcttgtcagcagcttcc
ttccaggaaacaactcgcgtcttgacggatgcagctatccgtggtaagaaagatcacctt
ctcggtctcaaagagaatgtcatcatcggtaagatcatcccagccggtactggtatggct
cgctaccgcaaccttgaaccacaggctgtcaatgaagtcgaaattatcgaagacattgta
gcagaagaagttgcagaagaattggtaacggactaa
DBGET
integrated database retrieval system
