Solanum tuberosum (potato): 102578270
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Entry
102578270 CDS
T02981
Name
(RefSeq) probable CCR4-associated factor 1 homolog 9
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
sot
Solanum tuberosum (potato)
Pathway
sot03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sot00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102578270
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sot03019
]
102578270
Messenger RNA biogenesis [BR:
sot03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
102578270
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
102578270
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
ScoMcrA_N
Motif
Other DBs
NCBI-GeneID:
102578270
NCBI-ProteinID:
XP_006361099
UniProt:
M1A5F6
LinkDB
All DBs
Position
Un
AA seq
267 aa
AA seq
DB search
MAIKIREVWAHNLESEFELISTVIDNYPYISMDTEFPGVVFKPKISYTRRQNSPSDQYKL
LKSNVDVLNLIQLGLTLSDADGNLPDLGSDGGYIWQFNFSDFDVARDLYAPDSIELLRRQ
GIDFEMNRECGIDSARFTELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRELPGGLE
EFMEVVRVFFGNKVYDMKHLMRFCNSLYGGLDRLAKTLSVDRAVGKCHQAGSDSLLTWHA
FQKMRDIYFVNDGAERHAGVLYGLEVN
NT seq
804 nt
NT seq
+upstream
nt +downstream
nt
atggctattaaaattcgagaagtatgggctcataatctcgaatcggaatttgaactcatt
tcaactgtcattgataactacccttacatatctatggatactgagtttcctggtgttgtt
ttcaagcctaagatttcttacactcgccgccagaactccccatcggatcagtataagctc
ttgaagtctaacgttgatgtgttgaatctcattcagcttggcttaactttatctgacgct
gacggtaaccttcctgatttgggatctgacggcggttacatatggcagttcaatttctcc
gatttcgatgtggcgcgtgatctctacgctccagactccatcgagttactccgccgacag
gggatcgactttgaaatgaaccgggaatgcgggatcgactccgcccggtttactgaactg
atgatgtcgtccggtttggtgtgtaatgaatcggtgagttgggttacgtttcacagcgcg
tatgattttgggtaccttgtgaagatactcacgcgccgggaacttcccggtggtttagag
gagtttatggaagttgtgagggtgtttttcggaaataaagtttatgatatgaagcatttg
atgagattctgtaatagtctttatggtggtttagaccggcttgcgaagacgttgtctgta
gaccgggcggtcgggaaatgtcaccaggccggttcagatagcttgctgacatggcatgcg
tttcagaaaatgagggatatttattttgtgaatgacggggcagaaagacatgctggcgtc
ttgtatggattagaagttaattaa
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