Solanum tuberosum (potato): 102578396
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Entry
102578396 CDS
T02981
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
sot
Solanum tuberosum (potato)
Pathway
sot03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sot00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102578396
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sot03041
]
102578396
03009 Ribosome biogenesis [BR:
sot03009
]
102578396
Enzymes [BR:
sot01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
102578396
Spliceosome [BR:
sot03041
]
Complex A
U1 snRNP components
U1 related factors
102578396
Complex B
102578396
Ribosome biogenesis [BR:
sot03009
]
Eukaryotic type
Pre-60S particles
Helicases
102578396
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
102578396
NCBI-ProteinID:
XP_006344459
UniProt:
M1BJP6
LinkDB
All DBs
Position
Un
AA seq
648 aa
AA seq
DB search
MSYPNYDSRYGDSGSYRQRRSDLMGPQPSMYPRPMSDGGAASYGRGGPLPYGGPQAGGPP
PMDGGSRGGMGGSGRVGGGYPPFEGGFPRGSDIGRFGGGGVDRVANGGMGERPGRFGAGA
SYSGGRSGGGRGGRGFDGGYSGGRGGGRFSSDGGRGSSGGRGGRHGRSRDDLDNLTLPKQ
DFGNLVPFEKNFYVENHAVRAMTDQEVAHYRARRDITIEGQDVPRPIQMFHEANFPDYCL
EVISRLGFVEPTPIQSQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLAQGD
GPIVLVLAPTRELAVQIQEEAVKFGSRANIRSTCIYGGAPKGPQIRDLRRGVEIVIATPG
RLIDMLEAQHTNLKRVTYLVLDEADRMLDMGFEPQIRKLISQIRPDRQTLYWSATWPKEV
ESLARQFLRNPYKVIIGSPELKANQSIRQVIEVVTDLEKYSRLIGLLKEVMDGSRILIFV
ETKKGCDQVTRQLRMDGWPALSIHGDKSQDERDWVLADFKTGRSPIMIATDVAARGLDVK
DIKCVINYDFPSSLEDYIHRIGRTGRAGATGTAYTFFTHANAKFTRELIKILQQAGQIVP
PQLSALARSSGHSTGGSNFRSRGRGGFGNRGQRSGSNVIPIGGSRRPW
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atgagctaccctaattacgactccagatacggtgattcaggctcctatcgacagcgacga
agtgacctaatgggtccgcagccttccatgtatccacggcctatgtctgatggaggtgcc
gctagctacggccgtggtgggccgcttccttatggaggtcctcaggcagggggtccaccg
cctatggatggtggttctagagggggtatgggtggatctggacgcgttggtggtgggtat
ccaccttttgagggtgggtttccaagagggtcggatataggcaggtttggaggtggagga
gttgacagagtggctaatggtggtatgggagaacggcctgggagatttggtgctggggca
agctacagtggaggtaggagtggtggtgggagaggaggtaggggttttgatggaggctac
agtggtggacgaggaggtggaaggtttagttcggacggaggacgtggtagtagtggcggg
agaggaggtaggcatgggagatcacgagatgatcttgacaaccttactcttccaaagcag
gactttggaaatttggtaccttttgagaagaacttttatgttgaaaatcatgcggtgagg
gcaatgacagatcaggaggttgctcattatcgtgcacggcgtgacattaccattgaagga
caggatgtccctaggccaattcagatgttccatgaggccaactttcctgattattgcctc
gaggttatttcaagactaggatttgttgagccaacacctatccaatcacaaggatggcca
atggctttaaagggcagagacttaattggaattgctgaaaccggttctggaaagactttg
gcatatttattgcctgctttggtccatgtcagtgcacagccccggttggcacaaggtgat
ggtccaattgtgctggtattagcacctacaagagaattagctgttcagattcaagaagaa
gctgtcaaatttggatcacgtgccaacataagaagtacttgcatttatggtggtgcccca
aaaggacctcaaatccgtgaccttagaagaggagttgaaattgtgatagcaacccccggt
cggttaatagatatgctggaagctcaacatacgaacctgaaacgagtgacatatcttgta
ttggacgaggctgatcgaatgctggatatggggtttgagcctcaaataaggaaactaatt
tcccagattagaccagatagacaaaccttgtattggagtgccacttggcccaaggaggtt
gaatcactggccagacagtttttacgtaatccctacaaagtcatcattgggtctccagaa
ttgaaagcaaatcaatctataaggcaagtcattgaagttgtcacagatttagagaaatat
agcaggttgattgggcttttgaaagaagtgatggatggaagtcgaatcctaatatttgta
gaaacaaagaaaggatgtgatcaagtcacaagacaattgagaatggatggatggccagct
ttatccatccatggtgataaaagccaggatgagagggattgggtccttgctgatttcaaa
actggaagaagtcccataatgattgccactgatgttgctgcacgtggtcttgatgtcaaa
gacataaagtgtgttatcaactatgatttcccttcaagtctcgaggattatattcatagg
attggcagaactggacgtgctggtgcaacaggaactgcctatacatttttcactcacgca
aatgccaagtttaccagagagcttatcaagatcctgcagcaggcaggacaaatcgttcct
cctcaactttctgcattagcaaggtctagtggtcatagcactggagggagcaatttcagg
tctagaggacgaggtggctttgggaaccggggacagagatctgggtctaatgtaattcct
attggcggttcaagaaggccttggtag
DBGET
integrated database retrieval system
