KEGG   Solanum tuberosum (potato): 102578520
Entry
102578520         CDS       T02981                                 
Name
(RefSeq) replication factor C subunit 3
  KO
K10756  replication factor C subunit 3/5
Organism
sot  Solanum tuberosum (potato)
Pathway
sot03030  DNA replication
sot03410  Base excision repair
sot03420  Nucleotide excision repair
sot03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:sot00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    102578520
   03410 Base excision repair
    102578520
   03420 Nucleotide excision repair
    102578520
   03430 Mismatch repair
    102578520
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:sot03032]
    102578520
   03036 Chromosome and associated proteins [BR:sot03036]
    102578520
   03400 DNA repair and recombination proteins [BR:sot03400]
    102578520
DNA replication proteins [BR:sot03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    102578520
  DNA Replication Termination Factors
   ELG1-RFC complex
    102578520
Chromosome and associated proteins [BR:sot03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    102578520
DNA repair and recombination proteins [BR:sot03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     102578520
  Check point factors
   HRAD17(Rad24)-RFC complex
    102578520
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 Rad17 RCF1-5-like_lid AAA_16 AAA_22 AAA_assoc_2 AAA_11 DUF815 AAA_5 AAA_14 DNAX_ATPase_lid ATPase_2 AAA_30 AAA_24 RuvB_N AAA_7 ResIII AAA_3 AAA_19 bpMoxR AAA_28 nSTAND3 IstB_IS21 AAA_2 AAA_18 RNA_helicase SLFN-g3_helicase TniB AAA_25 Mg_chelatase ABC_tran DO-GTPase1 TIP49
Other DBs
NCBI-GeneID: 102578520
NCBI-ProteinID: XP_006365532
LinkDB
Position
Un
AA seq 357 aa
MAETISLMDIDDDKIDTKPNNGKNIVSNTEPRSVPWVEKFRPQSLSDVAAHRDIVETIDR
LASSNRLPHLLLYGPPGTGKTSTILALARKLYGSQMHNMVLELNASDDRGIDVVRQQIQD
FASTQSISFGAKSAVKLVLLDEADAMTKDAQFALRRVIEKYTRNTRFALVCNNVNKVIPA
LQSRCTRFRFAPLDAVHVSERLKHVVEAEQLDVPEGGLKALVRLSNGDMRKALNILQSTH
MASQQISEDAVYLCTGNPLPKDIEQISYWLLNEPFTISCKRISEIKTRKGLALVDIVREV
TMFVFKIKMPATVRVQLINEMADIEYRLTFGCNDKLQLGSLISAFTRARSALVAAAK
NT seq 1074 nt   +upstreamnt  +downstreamnt
atggcggagacaatctcgttaatggatattgacgacgacaaaattgacacaaaaccaaac
aacggcaaaaacattgtctccaatactgaaccgagatcagtcccttgggtcgaaaagttt
cgtcctcagtctttatcagacgttgctgctcatcgcgatattgttgaaacaattgacagg
cttgcgagtagtaatcggttgccgcatttgctgctttatggacctcctggaactggaaag
acatctacaattcttgctcttgctcggaagttatatgggtctcagatgcacaatatggtt
ttagagctgaatgcctctgatgatcgtgggattgatgtggtgcgccagcagattcaggac
tttgctagtactcagagcatctcatttggtgcaaagtcagcggtgaagctagtactattg
gatgaagcagatgcaatgacaaaggatgcacagtttgctctgcgtcgagtgattgagaaa
tatacaagaaacactaggtttgccttggtatgtaacaatgtcaacaaggttattcctgcc
ctacaatcacgatgtacacgatttaggtttgctccactcgatgcagttcatgtctctgag
cggctgaaacatgttgttgaagctgaacagcttgatgtccctgagggtggtttaaaggca
cttgtacgattgagcaatggtgacatgcgaaaagctttaaacattttgcagtcaacacac
atggcttctcagcagatttcagaagatgctgtctatctgtgcactggaaacccattgccc
aaggacattgagcagatttcttactggcttctgaatgaaccctttactatcagttgcaaa
cgaatatcagaaatcaagacacgaaaagggttggctctggtggatatcgtgagagaagta
accatgtttgtcttcaagattaagatgccggcaactgttcgagttcagctgatcaatgag
atggctgatattgagtataggttgacttttggttgtaatgataagttgcagcttggatca
ctgatttctgcttttacacgagcaagatctgcacttgttgcagctgcaaagtaa

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