Solanum tuberosum (potato): 102578707
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Entry
102578707 CDS
T02981
Symbol
RPB1
Name
(RefSeq) DNA-directed RNA polymerase II subunit 1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
sot
Solanum tuberosum (potato)
Pathway
sot03020
RNA polymerase
sot03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sot00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
102578707 (RPB1)
09124 Replication and repair
03420 Nucleotide excision repair
102578707 (RPB1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sot03021
]
102578707 (RPB1)
03400 DNA repair and recombination proteins [BR:
sot03400
]
102578707 (RPB1)
Enzymes [BR:
sot01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
102578707 (RPB1)
Transcription machinery [BR:
sot03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
102578707 (RPB1)
DNA repair and recombination proteins [BR:
sot03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
102578707 (RPB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
102578707
NCBI-ProteinID:
XP_006340787
UniProt:
M0ZVV4
LinkDB
All DBs
Position
Un
AA seq
1839 aa
AA seq
DB search
MDLRFPFSPAEVAKVRTVQFGIVSPDEIRQMSVVHIEHGETTERGKPKPGGLSDPRLGTI
DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFMKPVLSILRCVCFNCSKILADEDDPK
FKQAMRIRNPKNRLRKMLDACKNKTKCEGGDEIDVQGHDTEEPVKKSRGGCGAQQPKISI
DGMKMVAEYKMQKKKSDDPEQMPEPVERKQQLSAERVLSILKRVSDEDCLLLGLNPEFAR
PDWMILQALPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS
EFAQLLQFHIATYFDNDLPGQPRATQRSGRPIKSICSRLKSKEGRIRGNLMGKRVDFSAR
TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT
LLGCRKVTKRDTFIEKDVFMNILMWWEDFDGKVPAPVILKPRPLWTGKQVFNLIIPKQIN
LLRYSAWHNDSEKGYITPGDTQVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA
RKFLGHTQWLVNYWLLQQAFSIGIGDTIADASTMEKINETISNAKAKVKELIKAAQEKLL
EAEPGRTMMESFENRVNQVLNKARDDAGSSAEKSLSESNNLKAMVTAGSKGSFINISQMT
ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIETQK
LDSLKAKKGTFDDMYAYEIDDPNWNPSYMLPEAVEDLKGIREIRSVFDAEVQKLEADRHQ
LGTEIAVTGDNSWPLPVNIQRLVLNAQKTFKIDFRRPSDMHPMEIVEAVDKLQERLKVVP
GDDYLSMEAQKNATLFFNILLRSALASKRVLKEYRLSREAFEWVVGEIESRFLQSLVAPG
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK
PEVGKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTLIEEDVEFVKSYYEMPDEEI
DPDKISPWLLRIELNREMMVDKKLSMADIAEKINVEFDDDLTCIFNDDNAEKLILRIRIM
NDEAPKGELDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKNSKVQKFDDNEGFKAE
NEWMLDTEGVNLLAVMTHEDVDASRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGS
YVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDHL
RGVTENIMLGQLAPIGTGSCSLYLNEEMLKQAIEIPLPSYMEGGLEFGMTPGRSPISGTP
YHDGMMSPNYLLSPNMRMSPITDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT
SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY
SPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPSARYSPSLAYSPT
SPKLSPSSPYSPSSPSYSPTSPSYSPTSPSYSPSSPTYSPSSPYNNSGTSPDYSPSSPQY
SPSAGYSPSAPGYSPSSTSQYTPRVSERDNKSVKDDKAG
NT seq
5520 nt
NT seq
+upstream
nt +downstream
nt
atggatttgcgcttccccttctcgccggcggaggttgccaaggtccggacggtccagttc
ggcattgtcagccccgacgaaattagacaaatgtctgtggtgcacattgagcatggtgag
actacggagagagggaaaccaaagcctggagggttgagcgatcctcggcttgggacgatt
gatcggaagatgaagtgtgagacgtgtatggctaacatggctgaatgtccggggcatttt
ggtcaccttgagcttgcgaaacctatgtttcatatagggtttatgaaacctgttcttagt
atccttcggtgtgtctgcttcaattgctcgaaaattctggcggatgaggatgatcccaaa
ttcaagcaggccatgagaatcaggaatcctaaaaacaggctgagaaagatgttggatgct
tgcaagaacaaaacaaaatgtgaaggaggggatgaaattgatgtacaaggtcatgatact
gaggaacctgtcaagaagagtagaggtggctgtggtgcacagcagccaaaaatttcaata
gatggtatgaaaatggttgctgaatataagatgcaaaagaaaaaaagtgatgatccggag
cagatgccagaaccagttgaaaggaagcaacaactctctgctgaaagggtgttgagtatt
ctgaagcgggtaagtgacgaagactgcctcttgcttggcctaaatccagagtttgctcgc
ccagattggatgattcttcaagcacttcccataccaccaccacctgttcggccttctgtg
atgatggatacttcatcaaggagtgaggatgatttaacacatcaactggccatgattatt
cgtcacaacgagaatttgaagaggcaggaaaggaatggggcaccggcacacatcatttcg
gagtttgcacagttattgcaatttcatatagctacgtattttgataatgatctgcctgga
caaccaagagctacgcaaagatcaggtagacctattaaatcaatatgtagtagattaaaa
tcaaaggaaggtcggatcagaggcaatctgatgggcaaaagagtagacttttctgctcgg
acagtgattacccccgatccaactattaacattgatcaattgggagtcccatggagtatt
gctctgaatctcacttatccagaaacagtgacaccatataacattgaaaggttaaaggaa
cttgttgaatatggacctcatccacctcctggtaaaaccggggccaagtatataattagg
gatgacggccaaaggcttgatcttcgatacttgaagaagagcagcgatcagcaccttgaa
ctaggatataaggttgagaggcacttaaatgatggggattttgttctcttcaatcggcaa
cccagtctacataaaatgtctattatgggacataggattaagatcatgccatattcaact
ttccgcttgaatttatctgtcacttctccttacaatgctgattttgatggtgacgaaatg
aacatgcatgttccgcagtcatttgaaaccagagcagaggtgctggagcttatgatggtc
cctaagtgtattgtttcaccccaggcaaataggcctgtaatgggtatcgtccaagatacc
cttttaggttgccgcaaagttactaaaagagatacctttatagaaaaggatgtctttatg
aacatattaatgtggtgggaggattttgatgggaaagtacctgctccagtgattcttaaa
ccaaggccactttggactggaaagcaagtgtttaacctcatcataccaaaacaaataaat
cttttaagatattccgcatggcataatgattcagaaaaaggatacataactcctggagat
actcaagttagaatagagaaaggggagttgctatctggtactctttgcaaaaagaccctt
gggacgtccactggaagtctgattcatgttatatgggaggaggttgggcctgatgctgct
cggaagtttttgggacatacacagtggctggttaattattggcttcttcagcaagcgttt
agcatcggaataggagatacaattgctgatgcttcaaccatggagaaaattaatgaaact
atctcgaatgcaaaagccaaagtcaaagaacttattaaagctgctcaagagaagctgtta
gaagctgaaccggggcgaactatgatggaatcatttgagaacagagtgaaccaggtgtta
aataaggctcgtgatgatgctggaagcagtgcagagaagagtttatcagagagcaataat
cttaaagctatggttactgctgggtcgaagggaagttttatcaacatatctcaaatgact
gcttgtgtggggcaacagaacgttgaaggaaaacgtattccatttggattcatagaccgt
actcttcctcattttaccaaagatgattatggtccggaaagtcgtggttttgtggagaat
tcatatctccggggactgaccccgcaagagttcttcttccatgctatgggtggtagagaa
ggtctgattgatactgctgtgaaaacttctgagaccgggtacattcagaggcggttagtg
aaggccatggaggatatcatggtcaagtatgatggcactgttaggaattcattgggggat
gtcatccagtttctgtatggggaagatgggatggattctgtttggattgagacacagaag
ctggattctctgaaagcaaagaaaggaacatttgatgacatgtatgcatatgagatcgat
gatcctaactggaacccaagttacatgttgccagaagctgtcgaagatttaaaaggtatt
cgggagattcgtagtgtgtttgatgcagaggtccagaaacttgaagctgatagacatcag
cttgggacagagattgctgtaacgggtgacaattcttggcctcttcctgttaacattcag
aggcttgtcttaaatgcccaaaagacatttaaaatagatttccggaggccctctgacatg
catcctatggagatcgtggaagctgttgataagttacaagagaggcttaaggttgttcct
ggtgatgattatctaagcatggaggctcaaaagaatgctactcttttcttcaatatcttg
ctccgtagtgccttggctagtaaaagggttctgaaggagtataggcttagtcgagaggct
tttgaatgggtagttggtgagatagagtctcgcttcttgcaatcccttgtggcaccagga
gagatgattggctgtgttgctgcacagtctattggtgaacctgccacacagatgactctt
aatacatttcattatgctggtgtgagtgccaagaatgttactcttggtgtgccaaggttg
agggagatcatcaatgttgccaagaaaatcaaaacaccttctctttctgtgtacttgaaa
cctgaggtaggcaaaacaaaagagagggccaaaactgtccagtgtgcgttagaatatacc
actttgcggagtgttactcaagccacagaagtgtggtatgatccagatcctatgagcacc
cttattgaagaggatgttgaattcgtcaagtcatactatgaaatgccagatgaagagatt
gaccctgacaaaatctctccatggttgcttcgcatagagttaaatcgtgaaatgatggtg
gataagaaacttagcatggctgacattgcggaaaagatcaacgttgaatttgatgatgac
ttaacctgtatttttaacgatgataatgcggaaaagctgatccttcgaattcgtattatg
aatgatgaagctccaaaaggtgagctggatgaatctgctgaggatgatgtattccttaaa
aagatcgagagtaacatgcttacagagatggctctccggggtattccagatattaataag
gtgttcataaagaatagtaaggtgcagaagtttgatgacaatgaaggattcaaagcagaa
aatgaatggatgttggacactgaaggtgtaaatcttttggctgttatgacacacgaagat
gtggatgcaagtagaacaacaagtaatcacttgattgaagttattgaagttcttggtatt
gaggcagttcgtagatcactgctggatgagttgagggttgtcatatcttttgatgggtcc
tatgtgaactaccgacatttggccatattgtgtgataccatgacctaccgtggtcattta
atggccattactcgtcacggtatcaaccggaacgatactggtcccatgatgagatgctcg
ttcgaggagacagtggacattcttctcgatgctgctgtatttgcagagtcagatcacctg
aggggtgtaacagaaaatatcatgttaggtcagcttgcaccaattggcacaggaagctgt
tctttgtacctcaatgaggagatgttgaaacaagctattgagataccattacctagctac
atggaaggtggtcttgaatttggcatgacacctgggcgttcacctatcagtggaaccccg
tatcatgatggaatgatgtctccaaattatttgctcagcccaaatatgcggatgtcaccg
attacagatgctcaattttctccttatgtgggtggcatggctttctctcctacttcatcc
cctggttacagtccatcatcccctggttacagcccatcatcccctggttacagcccgacc
tctccaggatacagccccacttcccccggttacagccccacatctcctggttacagcccc
acttcccccacttatagccccagctcccctggctacagcccgacaagtccagcatattct
ccaaccagtccttcatactcacccacatcacccagttatagtccaacatctccaagctat
agcccaacctcgcctagctatagcccaacatcacctagctacagccctacttctccggca
tacagccccacttctccggcctacagccccacttctccggcatacagccccacttcgcca
tcttacagccccacttcaccttcttacagccccacatcaccttcatatagccccacctca
ccctcttatagtccgacttctccatcatatagtccaacttctcctgcatacagtcctacc
tcccctggttacagcccaacatctcccagctatagcccaacatcaccatcctacagtcct
acatcaccaagttacaatccctcggcgagatacagcccctcccttgcatattcgccaacc
agcccgaagctgtctccttctagtccatacagcccgtcatctccaagttacagtcccaca
tcaccatcgtactctccaacatctccatcatattctccttcaagcccaacctatagtccc
agcagcccatacaacaactcaggtacaagcccagattatagtcccagttctccccagtac
agtccaagtgcagggtactcaccaagtgctcctgggtattcaccatcatctactagccag
tacaccccacgtgtaagtgagagagacaacaagagtgtcaaagatgacaaggctggttga
DBGET
integrated database retrieval system
