Solanum tuberosum (potato): 102578728
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Entry
102578728 CDS
T02981
Name
(RefSeq) protein TRANSPORT INHIBITOR RESPONSE 1-like
KO
K14485
transport inhibitor response 1
Organism
sot
Solanum tuberosum (potato)
Pathway
sot04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
sot00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
102578728
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sot04121
]
102578728
Ubiquitin system [BR:
sot04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
102578728
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Transp_inhibit
F-box_5
LRR_At5g56370
LRR_4
LRR_6
F-box-like
LRR_NXF1-5
F-box
LRR_8
Motif
Other DBs
NCBI-GeneID:
102578728
NCBI-ProteinID:
XP_006362983
LinkDB
All DBs
Position
Un
AA seq
605 aa
AA seq
DB search
MSTLAPHFRTVMVNSLPLEVLEHIFSDITLDKDRNSISLVCKSWYEAERCCRKSVFIGNC
YAVSPSILIRRFPDLRSVTIKGKPHFADFDLVPEGWGAYFYPWAVSMAKSYPFLEEIRLK
RMVVCDESLELISKSFKNFRVLVLQSCEGFTTDGLAAIAANCRNLRELDLGESEVEDLSG
HWLSHFPDSCTSLVSLNIACLASEVSFSALERLVARSPHLRTLRLNRAVSIEKLPKLLRH
ASKLVEFGTGSYSADMQADVSEVFVNVSQAFSGCNQLKGLSGFWDAVPAYFPTIYPVHSK
LTSLNLSYATIQIPDLGKLIGNCLNLQRLWVLDYIEDSGLEEIANTCKELQELRVFPSDP
FAPGPNVSLTEQGLVAVSMGCPKLQSVLYFCRQMTNEALVIIARNRPNMIRFRLCIIEPR
TPDYVTLEPLDAGFGAIVQHCKELRRLSLSGLLTDRVFEYIGVHAKKLEMLSLAFAGDSD
LGLHYVLSGCESLRKLEIRDCPFGDEALLANAAKLETMRSLWMSNCSVSFEACKLLAQKL
PGLNVEVIDERGHPDTRPESCPVEKLYIYRTVSGRRFDTPGFVWIIDEDAALTQYSNGNC
SLASS
NT seq
1818 nt
NT seq
+upstream
nt +downstream
nt
atgtcaactttagcaccccatttccgtacagtaatggtgaactcacttcccttagaagtt
cttgaacacatcttctccgacataactttagataaggacaggaactcaatatccttggtt
tgtaaatcttggtatgaagctgagaggtgttgtaggaaaagtgtgttcattgggaactgt
tatgctgttagcccttcaatcttgattagacgtttcccagatctcagatctgtaacgatt
aaagggaagccacattttgctgatttcgatcttgtacctgaaggttggggtgcatatttc
tatccatgggctgtttcaatggcgaaatcttatccatttcttgaggaaattaggcttaag
agaatggttgtttgtgatgagtcattggagctgatttcgaagtcgttcaagaattttaga
gtcttggttttacagtcttgtgaaggatttactactgatggacttgctgccattgctgct
aactgcaggaacctgagagaactggacctaggagaaagtgaagtagaagacctgagtggc
cattggcttagtcattttcctgatagctgcacatcacttgtgtcacttaacattgcttgt
ttggcttctgaggtcagcttctcagctttggagcgtctagttgctcgttctcctcatttg
aggactcttcggctcaatcgtgctgtttccattgagaaacttccaaagctacttcgtcat
gcttcgaagttggttgaatttggtacaggatcctactctgctgacatgcaggctgatgtt
tctgaagtttttgtaaatgtatctcaagctttttcaggctgtaatcaactcaaaggcttg
agtgggttttgggatgctgtgccagcctactttccaactatttatccagtccactccaaa
ctcacctctttgaatttaagctatgctaccattcaaatacctgatcttggcaagctcatt
ggcaactgtctcaatttgcaacggttgtgggtgctagattacattgaagatagcggtctt
gaggagattgccaacacttgtaaggaacttcaagagcttagggtgtttccttctgatcca
tttgctccaggaccgaatgtatccttgacagagcaaggccttgtagctgtctcgatgggc
tgccctaagcttcagtcagttttatacttctgccgccaaatgacaaatgaggccttagtt
attattgcaaggaatcgtcctaacatgatccgatttcgtttgtgtattattgagcctcga
actcctgattacgtgacccttgaaccacttgatgctggttttggggccattgtgcaacac
tgcaaggaattgcggcgactttctctttctggccttcttacagatcgtgtgtttgagtac
atcggggtccatgctaagaagttagagatgctttccttagcttttgcgggggatagcgat
ctaggcctccactatgttctctctggttgtgagagccttcgtaagttggagattagagac
tgcccctttggcgatgaggctctgttggctaatgctgcaaagctggagacaatgcgatcc
ctttggatgtctaattgttcagtaagttttgaagcatgtaagctgctagcccagaagttg
ccagggcttaatgttgaagttatagacgagaggggtcatccggatacgagaccagaaagc
tgccctgttgagaaactttatatatacaggacagtgtcaggaaggaggttcgacactcct
ggttttgtttggattattgatgaagatgcagcattgactcaatatagcaacgggaattgc
tctctggcttcttcttag
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