Solanum tuberosum (potato): 102578752
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Entry
102578752 CDS
T02981
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
sot
Solanum tuberosum (potato)
Pathway
sot03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sot00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102578752
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sot03019
]
102578752
Enzymes [BR:
sot01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
102578752
Messenger RNA biogenesis [BR:
sot03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
102578752
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
102578752
NCBI-ProteinID:
XP_006345714
UniProt:
M1CTH7
LinkDB
All DBs
Position
Un
AA seq
619 aa
AA seq
DB search
MLQRRLICSRVSNTVVQSNPGHSQSKWNVKQVTKSNFSAALEEISTCISDSDFIAVSLKN
TGAYSAPWQRIMPIDTAHIAYLKAKYAAERFQVLQFTVCPFSIKGSKLIVHPYNFHLFPR
DELKIGMPSYSFSCQSSYLTSMAQEGFDFNACIYDGISYLSKSQESAAVDRIGNASPISC
TVQTPSGYTVADSVFAERIKSRVKNWITACKDTNKKPEDALISSLRKIVSGDEVYGSRPC
LSIDVCSERQVRLVMETLKNFVDVIPLLNPAKGGAIRPVRVVLTSSEEDSILLQKELQNE
EKEHNKRLRGFREVINLISASQKPVVAHNSLNDFTFVHSKFLAPLPSTLEEFRSSLCLVF
PNVLDVNHIMKEISPQTKVNNLPACISYLKQRFFAPIDIEIPNQAEVNEVKTLGHDAVKI
SQLFAKLCSILKIAPRTPEAAEGHLPDAIECYTNSYSPCFTSSHGPADEDVSVRTDNTRK
ISSKNLVFLWGFRGVTSAGKLKSLLCGSHEVFHEFDVRMVDKSCAVVAFRNPGFAEVMLQ
LMYSGGICTNTLKEMLADGLTAAGYETYQKVCELGLWESDLASSMEKASEEIESFSEAQS
KELSGLCWNNDEMINLDDL
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
atgttacagaggcggttgatttgctcgagggtttcgaataccgttgtccaatcaaacccc
ggacatagccagagcaaatggaatgtaaagcaagttacaaaatccaacttctcagcggca
ttagaagagataagcacttgcatttccgactctgatttcattgccgtctcattgaagaat
accggagcctactctgcaccctggcaacgtattatgcctattgacaccgcccacatcgcc
tatctcaaagccaaatacgccgccgaacggtttcaggtccttcagttcaccgtttgcccc
ttttccataaagggttccaagctcatcgtgcacccatacaactttcatttgttccctcgt
gatgagttaaaaatagggatgccttcttatagtttctcttgtcaatcatcatacttgacc
tctatggctcaagaaggttttgatttcaatgcctgcatatatgatggcatatcatattta
tccaaatcacaagaatcagctgcagtagatagaattggaaatgcatcgcctataagctgt
acagttcaaactccatcaggatatacagttgctgattctgtatttgcagaaaggatcaaa
tctcgagttaagaattggataactgcttgcaaagatacaaacaagaaacctgaagatgct
ctaatcagttccttgagaaaaattgtctcgggagatgaagtatatggatccagaccttgc
ttgagcatagatgtctgcagtgaacgtcaagtgcgccttgtgatggagacactgaagaat
tttgttgacgtcatacctttgctaaacccagcaaagggaggagcaataaggcctgttcga
gttgttttgacaagttcagaagaagacagtattcttttacagaaggaacttcaaaatgag
gagaaggagcataataagcgcctccgtggctttcgagaggtgatcaatttgatttccgct
tctcagaaacctgttgttgcccacaactctcttaatgattttactttcgttcattccaag
ttcttagctccattgccatcaacgctggaagaattcagaagttcattatgtttggtcttc
ccgaatgtacttgatgtcaaccatattatgaaggaaatcagccctcagacaaaagtgaac
aatttgcctgcatgtatctcatatttgaaacaacgattttttgcccctattgatatagag
atacctaaccaagctgaggtgaatgaagtgaagactcttggacatgatgctgtgaagata
agccagttgttcgcaaagctgtgctccatattgaaaattgctccaagaactcctgaagct
gctgagggccatttgcctgatgcaattgaatgctacacaaattcgtacagcccttgcttt
accagttctcatggtcccgctgatgaagatgttagtgtgaggactgacaatactagaaag
atcagcagtaaaaatctagttttcctatggggattcaggggtgtgacatccgcaggaaag
ctgaagagcctcctatgtggttcacatgaagttttccatgagtttgatgttaggatggtg
gataaaagttgtgcagtggttgctttcagaaatcctggttttgcggaagtcatgttgcag
ctaatgtactctggaggaatttgcactaataccctgaaggagatgctggcagacggcctg
acagctgcaggttatgagacctaccagaaagtctgtgagttgggtctatgggaatcagat
ttagcaagttccatggaaaaggcttcggaagaaattgagagcttctcagaagcacagtcg
aaagagctgtcagggctgtgttggaataatgatgaaatgattaacctggatgatctttaa
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