Solanum tuberosum (potato): 102578999
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Entry
102578999 CDS
T02981
Name
(RefSeq) protein TRANSPORT INHIBITOR RESPONSE 1
KO
K14485
transport inhibitor response 1
Organism
sot
Solanum tuberosum (potato)
Pathway
sot04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
sot00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
102578999
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sot04121
]
102578999
Ubiquitin system [BR:
sot04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
102578999
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Transp_inhibit
F-box_5
LRR_At5g56370
LRR_4
F-box-like
LRR_NXF1-5
F-box
DUF1091
LRR_8
Motif
Other DBs
NCBI-GeneID:
102578999
NCBI-ProteinID:
XP_006352806
UniProt:
M1C7Y8
LinkDB
All DBs
Position
Un
AA seq
580 aa
AA seq
DB search
MSSSFPEQVLKHLFSLLTSHKDRNSISLVSKSWYELERRSRRSVFIGNCYAVSPEIMITR
FPQLTSIYLKGKPHFADFNLVPDGWGAYLQPWIAAMSPSYPWLEEIRLKRMVVTDDSLDL
ISTSFHHFKVLVLLSCEGFTTDGLAAIAANCRNLTELDLGESEVEDLSSDWLSHFPDGCT
SLVSLNISCLGSEISLSHLESLIARSPNLKTLRLSQAVPLEKLPHILSCASQLVEFGTGA
YSSEVQLQSDVFSNLQEAFSGCKILEGLSGFWDVMPAYLPAVYPVCSRLTSLNLSYATIQ
NPHLNKLISLCHNLQRLWVLDYIEDTGLQALAGTCKDLQELRVFPSNPFDPEPNVSLTEQ
GLVAVSDGCPKLQTVLYFCRQMRNAALITIARNSPNMVCFRLCILEPRTPDYLTLEPLDA
GFGAIVEQCKELRRLSLSGLLTDRVFEYIGTHAKKLEMLSVAFAGDSDMGLHHVLSGCES
LRKLEIRDCPFSDDALLANAAKLETMRSLWMSSCSVSFGACKLLSQKMPRLNIEVIDEMG
PLDTQPRSCPVDKLYIYRTVAGPRFDLPGFVRIMKEDAAH
NT seq
1743 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcgtcattccctgaacaagtgttgaagcacctcttctccttgttaacctcacac
aaggaccgtaacagtatatccttagtctctaagtcgtggtacgagctcgagaggcgctct
aggaggagtgtcttcatcggcaactgctacgccgttagccctgagattatgatcacacgc
ttccctcaactcacatccatctatctcaaaggaaagccccattttgctgactttaatctc
gttcctgacggatggggtgcctatcttcaaccttggattgctgcaatgtctccctcttat
ccttggcttgaggaaattagactcaagcgaatggttgtcactgatgactccttggacttg
atttccacctcatttcaccatttcaaggtcttggtcttgttgtcttgtgaaggctttact
accgatggacttgctgccattgccgctaactgcagaaatctcactgaactagacttggga
gaaagtgaagtggaggacctaagtagtgattggctcagtcattttcctgatggttgtacg
tcactggtgtcacttaacatttcttgtttgggttctgagatcagcttatcacatctggag
agtctcattgcacgttctcctaatttgaagacacttcggctcagtcaagctgtccccctt
gagaaacttccacacatattgtcttgtgcttcccaattggttgaatttggtacaggtgca
tactcttctgaggtacagttacagtctgatgttttctcaaacctccaagaagctttttca
ggctgcaagatacttgaaggcttgtctggattttgggatgtcatgccagcttaccttcca
gctgtatatccagtttgctccagactcacctcattgaatttaagctatgctactattcaa
aaccctcatcttaacaagctcataagtctgtgtcataatttgcagagattgtgggtacta
gactacattgaagataccggtctccaggcgcttgccggtacctgtaaagacctgcaagaa
cttagggtgtttccttctaatccctttgatccagaaccaaatgtttccctgacagagcag
ggacttgtagctgtttcagatggctgtcctaagctccaaacagttttatacttctgccgc
caaatgagaaatgccgctttgattactattgctagaaacagtcctaacatggtttgtttt
cgcttgtgtattttggaacctcgaactcctgattacttgactcttgaaccgcttgatgct
ggttttggggcaattgtagaacaatgcaaagagttgcggcgactttctctttctggcctt
cttactgaccgtgtgtttgagtacattgggacccatgctaaaaagttagagatgctttcc
gtcgcctttgctggggatagtgatatgggcctccaccatgtactctctggatgtgagagc
ctcagaaaactagagatcagagactgcccctttagtgacgacgctcttttggctaatgct
gcaaaactggagacaatgagatccctttggatgtcttcttgttcagtaagttttggagcc
tgtaagctgctaagtcagaagatgcctaggcttaatattgaagttatagatgagatgggt
cctctggacacgcagccaagaagctgccctgttgataaactttacatataccgaacagtg
gctggaccaaggtttgacctgcctggttttgttcggataatgaaagaagatgctgcacat
tag
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