Solanum tuberosum (potato): 102579257
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Entry
102579257 CDS
T02981
Name
(RefSeq) uncharacterized LOC102579257
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
sot
Solanum tuberosum (potato)
Pathway
sot03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sot00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102579257
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sot03000
]
102579257
03019 Messenger RNA biogenesis [BR:
sot03019
]
102579257
04121 Ubiquitin system [BR:
sot04121
]
102579257
Enzymes [BR:
sot01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
102579257
Transcription factors [BR:
sot03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
102579257
Messenger RNA biogenesis [BR:
sot03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
102579257
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
102579257
Ubiquitin system [BR:
sot04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
102579257
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
zf-TFIIIC
Baculo_IE-1
zf-UDP
End3
Rtf2
Motif
Other DBs
NCBI-GeneID:
102579257
NCBI-ProteinID:
XP_006340541
LinkDB
All DBs
Position
Un
AA seq
841 aa
AA seq
DB search
MTMMSNEEEKRCPLCAEEMDWTDQQFKPCKCGYQVCVWCWHHIMDIAEKDVSEGRCPACR
TKYEKDKVVAMQANFERAGNTNVNRKSKPPKAKTKANEVRKDLTNVRVIQRKMAYVTGLP
LGIADEDLLQRNEYFGQYGKISKVSLSRTAGGSIQLFTNDTFSVYITYSKEEEAIQCIQS
VHGFVLEGMYLRASFGTAKYCHAWLRNTVQYMPCNNLSCLYLHSLGADEDSFGKDVVAAI
HTRSRVQQIVGASSSAMKRSGNILPPPINELSCTSFTSTESSTIQSAGAASDIVNHNSYM
ARVITCSDKDEDAGDPNRMSASVDVGLCNRSGAEKDRNCSEDSRTLDLCSNLSPVTINKD
NLAQEPYSDTLLFEVPSSNDLVNHLPRDQNSIEISDEPFREDSISIDGQRSKDSNSISQR
AFLVSSHSAKCTGDSGGHSLMHRKTCSLSNNGTEHRSLHNEVEEASPPLSCVNSTIIDGL
HDLKFQSSVKSDTIYRGSNSFSNEEIVEHLRRTRNNCLNNYDESSAFSPAKNSMNSNILA
MNFGSRDDSLTLHHSLTGLCNEPNGQHDTWKFLHSGQGFSFMKQDGSASQRADLNSSSSN
ISLISKQASVLHDFREKKEQHMLDSQYQISRPKGMAPPGFSISSRELPPGFPLSDEIGGF
PRTLSGSQLVNSSSSLIHHPSSMRSFSSAGLEIGSQSRALEDEARLWLLMQRKHADRDGK
FSHVLASQTPSAYQDQRFNDADEHTNAKNLYGFSPRLVDQSQNFDQSLYTHFPPQKFGNG
PISNGYQHDMLGNFQCRNEVDGMAELQRNERLGFNKYYNGYGNQTFQGSGSGDVFARVFG
M
NT seq
2526 nt
NT seq
+upstream
nt +downstream
nt
atgacaatgatgagcaatgaagaagagaaaaggtgtcctctttgtgctgaagaaatggac
tggaccgatcagcaatttaagccttgcaaatgcggttatcaggtgtgtgtttggtgttgg
catcacataatggacatagcagagaaagatgtgtcagagggacgatgtcctgcatgtcga
actaaatatgaaaaggataaagttgtggcaatgcaagcaaattttgaaagggcagggaac
acaaatgtgaaccggaaaagtaaaccaccaaaggcaaagacaaaagctaatgaagtcagg
aaggatcttacaaatgttcgggtcattcaacgtaaaatggcatatgtgactgggctgcct
cttggaattgcggatgaagatctgttacaacggaacgaatattttgggcaatatgggaaa
atttctaaagtttctctatctaggactgccggtggttcaatccagctatttaccaatgat
acttttagtgtatatattacatattctaaagaggaagaggccatacagtgtattcaatct
gtacatggttttgtcctggaaggaatgtatttgagagcatcgtttgggactgcaaaatat
tgtcatgcttggttgagaaacacggtacagtacatgccttgcaataatctttcctgtcta
tatttgcatagccttggtgccgatgaagatagttttggtaaagatgtggtagctgcaatt
catacaaggagcagagttcaacaaattgttggtgcctctagtagtgcaatgaagcgctca
ggaaatatcttgccacctccaattaatgaattatcctgtactagctttacttctacggag
agttctaccattcaaagtgcaggtgcagccagtgatatagtgaatcacaatagctatatg
gctcgtgtcataacttgtagtgataaggatgaagatgctggtgaccccaacagaatgtca
gcttctgtagatgttggactgtgtaataggtctggtgcagagaaagatagaaattgcagt
gaggacagtagaactttggatttgtgttctaatctatctcccgtaacaattaacaaagat
aatcttgctcaagagccatattctgatacattgctttttgaagttccatcttctaatgac
cttgtcaatcatctgccaagggatcaaaattcaatagaaatttcagatgaaccattcagg
gaagactctatatctattgacggtcaacgatcgaaggattcaaatagtattagccaaagg
gcattccttgtgtcctctcattctgctaaatgcacaggggattctggtggtcattcgcta
atgcataggaagacatgtagtctgagtaataatggcacagagcatagatctttacataat
gaagtggaagaagcttctccaccactttcatgtgtaaattcgacaataattgatggatta
catgatttgaaatttcaaagttctgtcaaatctgatacaatttatagaggttctaactca
ttctccaatgaagaaatagtagagcacctgcgaaggactagaaataattgtttgaataat
tatgatgaaagttccgcattcagtcctgcgaagaacagtatgaattcgaacattttagct
atgaactttggttcacgtgacgattccttgaccttgcatcacagtttaactggcttgtgc
aatgaacctaatgggcagcatgatacctggaaattcttacacagtggtcaaggattctca
tttatgaagcaagatggatctgcaagtcaaagggctgatttgaattcttcttctagcaat
atcagtctgatatctaaacaggcatctgtccttcatgacttcagagaaaagaaagagcag
catatgcttgattctcagtatcagatctcaagaccaaaaggtatggcaccacctggtttc
tcaatatcctctagggagctgcctcctggttttccgttgtctgatgaaattggtggattc
ccccgtactctctctggaagtcaattagtaaatagttcatcaagtttgattcaccacccc
tcatcaatgagaagctttagcagtgcaggtctggaaattgggtcacagagtagagctttg
gaagatgaggcaagactctggcttctgatgcaacgaaaacatgctgatcgagatgggaaa
ttctctcatgttcttgcttcacaaactccgtctgcatatcaggaccagaggtttaatgat
gcagatgagcatactaatgcgaagaacttatatggcttttcaccaaggttggtggatcaa
agccaaaactttgaccaatctttgtacacacatttccccccacagaagtttggtaatggc
cccatttccaacggctatcagcatgacatgttgggaaatttccaatgtagaaatgaggtg
gatggtatggcagaacttcagagaaatgagagattaggtttcaacaaatactataatggg
tatggaaatcaaacattccaggggtcagggtcaggcgatgtatttgccagggtgtttggg
atgtaa
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