Solanum tuberosum (potato): 102579743
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Entry
102579743 CDS
T02981
Name
(RefSeq) eukaryotic initiation factor 4A-3
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
sot
Solanum tuberosum (potato)
Pathway
sot03013
Nucleocytoplasmic transport
sot03015
mRNA surveillance pathway
sot03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sot00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102579743
09122 Translation
03013 Nucleocytoplasmic transport
102579743
03015 mRNA surveillance pathway
102579743
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sot03019
]
102579743
03041 Spliceosome [BR:
sot03041
]
102579743
03009 Ribosome biogenesis [BR:
sot03009
]
102579743
03012 Translation factors [BR:
sot03012
]
102579743
Enzymes [BR:
sot01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
102579743
Messenger RNA biogenesis [BR:
sot03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
102579743
mRNA cycle factors
Stress granule specific factors
102579743
Spliceosome [BR:
sot03041
]
Complex C
Other components
EJC/TREX
102579743
Ribosome biogenesis [BR:
sot03009
]
Eukaryotic type
90S particles
Helicases
102579743
Translation factors [BR:
sot03012
]
Eukaryotic type
Initiation factors
eIF-4
102579743
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
Cas3-like_C_2
NAT10_TcmA_helicase
Motif
Other DBs
NCBI-GeneID:
102579743
NCBI-ProteinID:
XP_006366335
UniProt:
M1ACK8
A0ABQ7WAP4
LinkDB
All DBs
Position
Un
AA seq
409 aa
AA seq
DB search
MEAVASGSVVPANRRRPPMEEDRLVFETSKGVEPITSFAEMGIKDDLLRGIYQYGFEKPS
AIQQRAVLPIISGRDVIAQAQSGTGKTSMIALTVCQVVDTKNSEVQALILSPTRELAAQT
EKVILAIGDYINIQAHACIGGKSVGEDIRKLEHGVQVVSGTPGRVCDMIKRRTLRTRAIK
LLVLDESDEMLSRGFKDQIYDVYRYLPPELQVVLISATLPNEILEITSKFMTDPVRILVK
RDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTNKMRENNF
TVSSMHGDMPQKERDAIMAEFRGGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYI
HRIGRSGRFGRKGVAINFVKTDDIKILRDIEQYYSTQIDEMPMNVADLI
NT seq
1230 nt
NT seq
+upstream
nt +downstream
nt
atggaggcggtggcgtcagggtcggttgttccggcgaacaggaggaggccgccgatggag
gaagacaggttagttttcgagacatccaaaggtgttgaaccaataacgagtttcgctgag
atggggattaaagatgaccttcttagagggatttaccaatacggcttcgaaaaaccatct
gccatccaacaacgggctgtcttgcccattatatccggccgtgatgtcattgctcaggca
caatccggtaccggaaaaacctccatgattgcccttaccgtttgccaagttgtcgatacc
aaaaattccgaggtacaagcattgatattgtctcctacacgggagcttgcagctcagacg
gaaaaggtgattttggctattggagattacattaacatacaggcacatgcatgtattgga
ggcaaaagtgtgggtgaagacatcagaaagctagagcatggagtacaagtagtctctgga
actcctggaagagtctgtgacatgattaaaaggagaactttacgaactagggccataaaa
ttattggttcttgatgaatctgatgagatgttgagccgtggttttaaagatcagatatat
gatgtttacagatatcttccaccagagcttcaggttgtactgatttctgccactcttcca
aatgaaattctggagataacaagcaaatttatgacagatcctgttcggattcttgtaaaa
cgtgatgaattgactctagagggcatcaaacagttctttgtagcggtggagagagaagag
tggaaatttgatacactgtgtgatctttatgatacactcaccatcacccaggctgttatt
ttctgcaacacaaaacgaaaggttgattggctaactaacaagatgcgtgagaataatttt
acagtctcatctatgcacggagacatgccacagaaggagagagatgctattatggctgag
ttccgaggtggcacgactcgtgttctaatcacaacagatgtttgggcgaggggacttgat
gttcaacaggtgtctttggtgattaattatgaccttccaaacaacagagagctctacatt
catcgcattggtcggtctggtcgttttggtcgaaagggtgttgctataaattttgtgaag
actgatgatattaaaattttgagagacatagagcaatactacagtacccagatagatgaa
atgcccatgaacgtggctgatttgatataa
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