Solanum tuberosum (potato): 102579913
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Entry
102579913 CDS
T02981
Name
(RefSeq) vacuolar protein sorting-associated protein 18 homolog
KO
K20181
vacuolar protein sorting-associated protein 18
Organism
sot
Solanum tuberosum (potato)
Pathway
sot04142
Lysosome biogenesis
sot04145
Phagocytosis
sot04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
sot00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagocytosis
102579913
04142 Lysosome biogenesis
102579913
04148 Efferocytosis
102579913
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sot04131
]
102579913
Membrane trafficking [BR:
sot04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
102579913
Hops complex
102579913
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pep3_Vps18
VPS18_solenoid_2nd
VPS18_solenoid_1st
Clathrin
VPS18_RING_C
zf-RING_11
zf-RING_Vps41
zf_RING_Vps8
RPN1_RPN2_N
zf-rbx1
zf_RING_Vps8_fungal
zf-RING_UBOX
Nup54_57_C
zf-C3HC4
Beta-prop_RSE1_1st
zf-RING_2
Motif
Other DBs
NCBI-GeneID:
102579913
NCBI-ProteinID:
XP_006361555
LinkDB
All DBs
Position
Un
AA seq
987 aa
AA seq
DB search
MEGRHHVFSVDLLERYATKDRGAITCMATGNDVIVLGTNKGWVIRHDFGVGDSYDIDLSV
GRPGEQSIHKVFVDPGGSHCIATVIGSSGADTYYTHAKWTKPRILSKLKGLVVNAVAWNR
LHITEASTREIILGTDNGQLYEMAVDVKDKMEKYIKLLFELKELPEAFTGLQMETASVHN
GTRFYVMAVTPTRLYSFTGIGSLDAIFASYVDRTVHFMELPGEIPNSELHYFIQQRRAVH
FAWLSGAGIYHGDLKFGALHSSPNGDENFVENKALLDYSKFSEGVEGVKPSSLAMSEFHF
LLLIGNKVKVVNRISEQIVEELYFDQTSDAVSRGIIGLCSDASAGLFYAYDQNSIFQVSV
NDEGHDMWKVYLDLKEYAAALASCRDALQRDQVYLVQAEAAFVAKEFLRAASFYAKINYV
LSFEEISLKFISIGEQDALRTFLLRKLDNLSKDEKCQITMISTWTTELYLDKINRLLLED
DGALDSNNTEYQSLIKEFRAFLSDCKDVLDEATTMKLLESYGRVDELVFFASLKEQYEIV
LHHYVQQGEAKKALQVLQKPNVPTELQYKFAPDLIMLDAYETVESWMTTKSLNPRKLIPA
MMRYSSEPHAKNETHEVIKYLEYCVHRLQNEDPGVHNLLLSLYAKKEDESALLRFLECKF
GKGQPGGPEFFYDPKYALRLCLKEKRMRACVHIYSMMSMHEEAVALALQVDPELAMAEAD
KVEDDEDLRKKLWLMIAKHVIEQEKGTKRENIRKAIAFLKETDGLLKIEDILPFFPDFAL
IDDFKEAICSSLEDYNEQIEKLKQEMNDATRGADNIRNDISALAQRYTVIDRDEECGVCR
RKILNVGGDYRMTTSYMFVGPMAPFYVFPCGHAFHAQCLIAHVTRCTNQAQAEYILDLQK
QLTLLGTEPKNVSNGGLSEEPLASVTPMHKIRSQLDDAVASDCPFCGDLMIREISLPFIL
PEEAEESESWEIKPHNHPSQRSLSLAV
NT seq
2964 nt
NT seq
+upstream
nt +downstream
nt
atggaaggaagacatcacgttttctctgtagatcttcttgaaagatatgccacaaaagac
cgtggagccattacatgcatggcgactggcaatgatgtcatcgttcttggaaccaataaa
ggctgggtgatcagacatgactttggagtgggtgattcttatgatatagatctctctgtt
ggcaggcctggggaacaatcaattcataaggtttttgttgaccctggagggagccactgt
attgccactgttattggtagtagtggtgccgatacatattatactcatgctaaatggaca
aagcctcgtattttgagcaaactaaaaggtcttgttgtcaatgctgtcgcctggaacaga
ctacatataacagaagcttcaactagagaaatcattttgggtacggacaatggtcaactt
tacgagatggctgtagatgtaaaggataaaatggagaagtacattaagttactatttgaa
cttaaagaactacctgaggcattcactggtttgcagatggaaacagcaagtgtgcacaat
ggtaccagattttatgtgatggctgttacacctactcgactttactctttcacagggatt
ggatcacttgatgcgatttttgcaagctatgtggaccgcacagttcatttcatggagctt
cctggtgaaatacctaacagtgaactgcattactttatccagcaaaggagggctgtacac
ttcgcatggctttctggagcaggtatctaccatggtgacctaaaatttggagcactacat
agttcgccaaatggggatgaaaactttgtggaaaacaaagctcttctggactactctaaa
ttctctgaaggagttgaaggtgtcaaacctagctctctggctatgtccgagtttcatttc
ctacttctcattggtaacaaggttaaggtggtgaacaggataagtgaacagatagtagaa
gaactttattttgatcagacatctgatgcagtttcaagaggtattattggcttatgtagt
gatgcctcagctgggttgttttatgcatatgaccaaaattctattttccaggtgtctgta
aatgatgaaggtcatgatatgtggaaagtgtacttggacttaaaagaatatgctgcagct
ttggctagttgtcgtgatgccctgcagagagaccaagtttatctggttcaggctgaagct
gcttttgttgccaaggagttcctcagagctgcatcattctatgcaaaaattaactatgta
ttatcttttgaagagatctcgttgaagttcattagcataggtgaacaggatgcattgaga
acatttctcctgcggaagcttgataatctttcaaaggatgaaaaatgtcaaataacaatg
atttcaacatggacaactgaattatatcttgataagatcaatcggctgcttctggaagat
gacggtgcattggacagtaataatactgagtaccaatcactcattaaagagtttcgtgct
ttcctaagtgactgcaaggatgtattggatgaggcaaccaccatgaaactactagaaagc
tacggtagagttgatgagctagtgttctttgctagtctaaaggagcaatacgaaattgta
cttcaccactacgttcagcaaggagaagcaaagaaggcgttacaagttcttcagaagcct
aatgttccaacagaacttcagtacaagtttgcgccagatctcatcatgcttgatgcatat
gaaactgttgagtcatggatgaccactaagagtttgaacccgagaaagctcattcctgca
atgatgcgttattcaagtgaaccacatgcaaagaatgaaactcatgaagtaatcaaatac
ctggagtattgtgttcatcgtttacagaatgaggatcctggcgttcacaatctgttactt
tccttatatgccaaaaaggaagatgagagtgctcttctgcgtttcctagaatgcaagttt
ggtaaagggcaaccaggtggtcctgaattcttttatgatcccaaatatgcgctacgcctt
tgcctcaaggaaaagaggatgcgagcttgtgttcatatatacagcatgatgtctatgcat
gaagaagcagttgctctagcactacaggttgatccagagcttgcgatggctgaagcagac
aaggtagaagatgatgaggacttgaggaagaagctttggctgatgattgctaagcatgtc
attgagcaggaaaaaggaaccaaaagggagaatatacgaaaggcaattgcttttctcaag
gaaactgatggtctattaaagattgaggacatcttacccttcttcccagactttgcttta
attgatgacttcaaggaagcaatttgctcatccttagaagattacaatgagcaaattgaa
aaactaaagcaggagatgaatgatgcaacacgtggtgccgataacattagaaatgacatc
agcgctcttgctcagcgatatactgtaattgatcgggatgaggaatgtggggtttgccgg
cggaaaatattaaatgtgggtggtgattatcgaatgactacaagttatatgtttgttgga
ccaatggctcctttctatgtctttccatgtgggcatgcatttcatgctcaatgcctgatt
gctcacgtgacaaggtgtactaatcaagctcaagctgaatacattctggatctgcagaag
caacttactttacttggcactgaacctaagaatgtgtcaaatggtggcttgtctgaagaa
ccgctagctagcgtgacgcccatgcataagatccggtcacagttggatgatgctgtagct
agtgattgcccattttgtggcgaccttatgatccgagagatttccttgcctttcattctg
ccagaagaagcagaagaatctgaatcgtgggagataaagccacataatcatcctagtcag
agaagcctttctttagctgtgtga
DBGET
integrated database retrieval system
