Solanum tuberosum (potato): 102579983
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Entry
102579983 CDS
T02981
Name
(RefSeq) SNF2 domain-containing protein CLASSY 1-like
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
sot
Solanum tuberosum (potato)
Pathway
sot03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sot00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
102579983
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sot03400
]
102579983
DNA repair and recombination proteins [BR:
sot03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
102579983
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
SAWADEE
Motif
Other DBs
NCBI-GeneID:
102579983
NCBI-ProteinID:
XP_006353420
UniProt:
M1C7N3
LinkDB
All DBs
Position
Un
AA seq
1286 aa
AA seq
DB search
MKRHIHYNAHPIDPHPFEAFWYGSWQAVERLRINMGTITTHVLVDGEVIEENIPVTNLRM
RSRKATLSDCACFLRPGLEVCVLSIPYQGEDSGDEKDVKPVWIDGKIRSIERKPHELTCT
CEFHVSVYVTQGPPPILKKTLSKEIKMLPIDQIAVLQKLEPKPCEDKHYRWSSSEDCNSL
QTFKLFIGKFSSDLTWLMTASVLKEATFDVRSIHNQIVYEIVDDDLVKKESNPNQHSHSV
NFKLEDGVQTTTVFQFSRDIPDVNSTSDLSEAGPLVLYDLMGPRRSKRRFVQPERYYGCD
DDMAEFDVEMTRLVGGRRKVEYEELPLALSIQADHAYRTGEIDEIARSYKRELFGGSIRP
HEKSSESSSGWRNALKSDVNKLADKKSVTADSQHQLAIVPLHPSSGTDLTVHEQVPLDVD
VPEHLSAEIGEIVSRYIYFNSSSTSHDRKASKMNFTKPEARRWGQVKISKLKFMGLDRRG
GALGSHKKYKRNSSKKDSIYDIRSFKKGSVAANVYKELIRRCMANIDATLNKEQPPIIDQ
WKEFQSTKSDHRESGDHLAMNRDEEVSEIDMLWKEMELALASCYLLDDSEDSHVQYASNV
RIGAEIRGEVCRHDYRLNEEIGIICRLCGFVSTEIKDVPPPFMPSSNYSSNKEQRTEEAT
DHKQDDDGLDTLSIPVSSRAPSSSGGGEGNVWELIPDLGKKLRVHQKRAFEFLWKNIAGS
IVPAEMQPESKERGGCVISHTPGAGKTLLIISFLVSYLKLFPGSRPLVLAPKTTLYTWYK
EVLKWKIPVPVYQIHGGQTFKGEVLREKVKLCPGLPRNQDVMHVLDCLEKMQMWLSQPSV
LLMGYTSFLTLTREDSPYAHRKYMAQVLRHCPGLLILDEGHNPRSTKSRLRKGLMKVNTR
LRILLSGTLFQNNFGEYFNTLTLARPTFVDEVLKELDPKYKKKNKGASRFSLENRARKMF
IDKISTVIDSDIPKKRKEGLNILKKLTGGFIDVHDGGTSDNLPGLQCYTLMMKSTTLQQE
ILVKLQNQRPIYKGFPLELELLITLGAIHPWLIRTTACSSQYFKEEELEALQKFKFDLKL
GSKVKFVMSLIPRCLLRREKVLIFCHNIAPINLFLEIFERFYGWRKGIEVLVLQGDIELF
QRGRIMDLFEEPGGPSKVMLASITTCAEGISLTAASRVILLDSEWNPSKSKQAIARAFRP
GQDKVVYVYQLLATGTLEEEKYKRTTWKEWVSSMIFSEDLVEDPSHWQAPKIEDELLREI
VEEDRATLFHAIMKNEKASNMGSLQE
NT seq
3861 nt
NT seq
+upstream
nt +downstream
nt
atgaagaggcatatacattacaatgctcatccaattgatccacacccttttgaggcattc
tggtacggatcttggcaagctgtggagcgcctaaggatcaatatggggaccatcactact
catgttctagttgatggggaggtgattgaggagaatattccggtaacaaatcttcgaatg
aggtctagaaaagctactttatctgattgtgcctgcttcttacgacctggacttgaggtt
tgtgtgctttcaatcccttaccaaggagaagattcaggggatgagaaagatgtcaagcct
gtgtggattgatggaaaaataagatctatagagaggaagcctcatgagctcacttgtact
tgcgaatttcatgtcagcgtttatgtcactcaaggccctcctcccattttgaagaaaacc
ctaagtaaagagataaagatgttgcccattgatcagattgcagttctccaaaaacttgaa
cctaaaccttgtgaagacaaacattaccgttggagttcttctgaggactgcaattcgttg
cagacttttaaactattcataggaaaattctcctctgacctcacatggttaatgactgca
tctgtcctgaaagaagctacatttgatgtaagatcgatccataaccagattgtctatgag
attgtggatgatgatctagtcaagaaagaatcaaatccaaaccaacattctcactccgtg
aatttcaagttagaagacggagttcaaacaaccactgtttttcaattcagtagggatatc
ccagatgtaaattctaccagtgaccttagtgaagctgggcctctagttctgtatgatcta
atgggcccacgaaggtcaaagcgtcgatttgtacagccagagcgttattatggatgtgat
gatgatatggcagaatttgatgttgagatgacaaggttagttgggggtaggagaaaagtg
gagtatgaagaactaccacttgcactttctattcaggctgatcatgcttatcgaactggt
gaaatcgatgaaattgccaggtcttacaagagagagttgtttggaggaagtatcagacct
catgagaagtcctctgaaagttcatccggatggagaaatgcactcaaatcagatgtaaat
aagcttgcagacaagaaatcagttacagctgacagtcaacatcaacttgctattgttccc
ctgcatccttcttcaggaactgatttaactgtccatgaacaggttccgcttgatgttgat
gttcctgaacatttgtctgcagagattggtgaaatagtttccagatatatttatttcaat
agttcttcaacatcgcatgataggaaagcttccaaaatgaacttcacaaaaccagaagct
agacgctggggtcaagtcaaaatttcaaagttaaagttcatgggacttgatcgaagaggt
ggggcgttaggttcacataagaaatacaaaagaaatagttcaaagaaggatagtatttat
gatataagatcattcaaaaagggttctgtagcggctaatgtgtacaaggaattgattaga
aggtgcatggcgaacattgatgccacacttaataaggaacagccaccaataattgatcag
tggaaagagtttcagtcaacaaaatctgaccacagagagtcaggtgatcatctcgcaatg
aatagggacgaagaggtttcagaaattgatatgttatggaaggagatggaactagccctg
gcatcatgttatcttctagatgacagtgaggattcccatgttcaatatgcaagtaatgtc
aggataggagctgaaatacgtggagaagtttgtcgacatgattatcgactgaatgaagaa
attggaattatttgccggctatgtggattcgttagcaccgaaataaaggatgttccacca
ccctttatgccttcgtcaaactacagttccaacaaggagcaaagaactgaagaagctaca
gatcacaagcaggatgatgatggccttgatactctgtccattcctgtttcttccagagca
ccctcatcatcaggaggaggggaaggaaatgtctgggagttgatacctgatctaggaaaa
aaattacgggtacaccaaaagagagcctttgaatttctgtggaaaaatattgctggatcc
atagtacctgcagaaatgcaaccagagagcaaagagagaggtggctgtgttatttctcat
actccaggagctgggaaaaccttactaattatttccttccttgtaagctatctgaagtta
tttcctggatcacgaccattggtccttgctcccaagacaacactctacacctggtacaaa
gaagtactaaagtggaagattcctgtgccagtctaccaaattcatggtggtcaaaccttt
aagggagaggttctaagggaaaaggtgaaattatgtcctggtcttcctcgcaaccaagat
gtcatgcatgtcttggactgccttgagaaaatgcagatgtggctttcgcaacccagtgtt
ctccttatgggttatacctcttttttaacactgacacgggaagattcaccttatgcgcat
aggaaatatatggcccaggtgttgcggcattgtccagggctactcatacttgatgaaggg
cacaacccaagaagtacaaaatccaggttaagaaagggtctaatgaaggtcaatacacgg
cttaggatattactttctggtacattatttcagaataattttggagagtatttcaataca
cttaccttagcaaggccaacctttgttgatgaggtcttgaaggagctggatcccaagtac
aagaagaaaaacaaaggtgcatcgcgcttttcattggaaaatcgagcaagaaagatgttt
attgataaaatttcaaccgtcattgattcagacatccccaagaaaaggaaagaaggccta
aacatattgaagaaactaacaggtggattcatagatgtgcatgacggtggaacatctgat
aaccttcctggtttacaatgttacaccttgatgatgaaatcaactactcttcaacaagaa
attttggtgaagcttcaaaatcaaaggcccatctacaaaggatttcctctggagttagag
ctgttgattacccttggtgcaatccatccttggttgatcagaacgacagcatgttctagc
cagtacttcaaggaagaggagctggaggctctccagaaattcaagtttgatctgaagctg
ggttcaaaagtcaaatttgtaatgagcctaattcctcgttgtctcctcaggagagaaaag
gttttgatattttgccacaatattgctccaattaatctttttctggagatatttgagagg
ttctatgggtggagaaagggcatcgaagtactggtgcttcaaggtgacattgagcttttt
caaagaggaaggataatggatctatttgaggagccaggtggaccatcaaaggttatgttg
gcatccattacaacttgtgcagaaggcattagcttgaccgcagcatcacgtgtaatatta
ctggattcagagtggaatccttctaagagcaagcaagccattgcacgagcttttcgtcct
ggtcaggacaaagttgtgtatgtctaccagcttctggcaacgggcacactggaagaggag
aaatacaaaagaacaacatggaaagaatgggtatcaagcatgatattcagtgaagacctt
gtggaggacccttctcactggcaagctccaaaaattgaagatgaattattgagagaaatt
gttgaggaggatcgagctacattattccatgccattatgaaaaatgagaaggcttccaac
atgggaagtctgcaggaatga
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