Solanum tuberosum (potato): 102580551
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Entry
102580551 CDS
T02981
Name
(RefSeq) 30-kDa cleavage and polyadenylation specificity factor 30-like
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
sot
Solanum tuberosum (potato)
Pathway
sot03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sot00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
102580551
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sot03021
]
102580551
03019 Messenger RNA biogenesis [BR:
sot03019
]
102580551
Transcription machinery [BR:
sot03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
102580551
Messenger RNA biogenesis [BR:
sot03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
102580551
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
zf-CCCH_2
zf-CCCH
Torus
zf-CCCH_3
Motif
Other DBs
NCBI-GeneID:
102580551
NCBI-ProteinID:
XP_006359103
LinkDB
All DBs
Position
Un
AA seq
692 aa
AA seq
DB search
MDEGEGGLNFDFEGGLDTGPTHPTASVPVIQSFDHTAAAAPSANINPPTVSAAVGGQSDV
GFVGNRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQDCVYKH
TIEDIKECNMYKLGFCPNGPDCRYRHAKMPGPPPPVEEILQKIQHLASYNYGYSNRFNQN
RNANYSTQSDKSQASQAQNGMSLAVKSTATETPIIQQHQPNQQVQPPQLQGGPTQAQIHP
NGQQNQADRTAVVLPQGTSRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDSVEN
VILIFSVNRTRHFQGCGKMTSRIGGAANGGNWKHEHGTAHYGRNFSVKWLKLCELSFQKT
HHLRNPYNENLPVKISRDCQELEPSVGEQLASLLYLEPDSELMAISLAAESKRQEEKAKG
VNPDNGKDNPDIVPFEDNEEEEEEEEEEESEDEDESFDQGFGPAALGRGRGRGIAWPPIM
PFGHGPRPPPGMRGFPPGMMGDGFSYGAMTPEGFPMPDHFGMGPRPFGPYGPPFSSDLMF
HGRPPAGGFGMMMGPGRPPFMGGMGPGATGPPRAGRAVGMHPSFVPPSSQPSQYPYKAKR
EQRAPVSDRNDRFSSDQGKGQEMMGSVGGPDGVHMQIGKSEHDNQFGAGNSQKNEESESE
DEAPRRSRHGDGKKKRRDVDEDAATGSENRCQ
NT seq
2079 nt
NT seq
+upstream
nt +downstream
nt
atggacgaaggagaagggggtttgaattttgattttgagggtggcttagacactgggcca
acacacccaactgcatctgttccagtaatacaatctttcgatcacactgcagcagccgct
ccgagtgctaatattaacccgcctactgtctcggcagctgttggcggccaaagcgatgta
ggatttgttggaaatcgtcggagtttcaggcagactgtttgccgccactggctgcggtca
ctgtgtatgaagggtgatgcctgcggcttccttcaccagtatgataaatcacgaatgccc
atttgtcgcttctttcgactctatggtgagtgccgtgaacaggactgtgtttataagcac
acgattgaggatatcaaggagtgcaacatgtacaaattggggttttgtccaaatggtcct
gattgtcgatatagacatgcaaagatgcctgggcctccacctccagtggaagaaatcctt
cagaaaattcagcatctggcatcctacaactatggttactcaaacaggtttaatcaaaat
cgaaatgctaattattcaacccagtcagacaaatctcaggcttcacaagcacagaatgga
atgagtcttgctgttaaatctacagcaactgagacacccattatacaacagcaccagccg
aatcaacaagttcagccacctcaactacaggggggcccaactcaagcacaaattcatccc
aatggccagcaaaatcaagctgatagaactgcagtagtcctgcctcaaggaacttctagg
tacttcatagttaaaagctgcaaccgtgagaatcttgaattgtcagtgcaacaaggagtt
tgggcaactcaaagaagcaatgaggctaaactaaatgaagcttttgactctgtggaaaat
gtcattctgatattttcagtcaaccggaccagacattttcagggttgtggaaagatgaca
tctagaattggtggcgctgctaatggaggaaactggaagcatgaacatggaactgcccat
tatggacgtaatttttcagtgaaatggttgaagctctgtgaactgtccttccagaaaact
caccatttgaggaatccatacaatgagaacttaccagtgaagataagcagagattgtcaa
gaattagagccctctgttggtgagcagttggcttctttgctatatcttgaaccagatagc
gaacttatggcaatctcacttgcagcagaatccaagcgacaggaagaaaaggcaaaggga
gtgaaccctgacaatgggaaagataacccagatattgtaccatttgaagacaacgaagaa
gaggaagaggaagaggaagaggaagaaagtgaggacgaggatgaaagctttgatcaaggt
tttggaccagctgcgcttggtagaggaaggggcaggggaattgcatggcctccaatcatg
ccttttggacatggtcccaggcctcctcctgggatgcgaggcttccctccaggcatgatg
ggtgatgggttttcttatggagctatgacacctgagggtttcccaatgcctgatcatttt
ggaatgggtccccgaccttttggtccatatggaccaccattttcaagtgatttgatgttt
catggccgccctccagctggtggatttgggatgatgatgggtcccggaaggccccctttc
atgggcggaatgggtccgggagcgacaggcccacccagagctggccgagcagttggaatg
catccatcattcgttccaccctcatctcagccttctcaatatccttataaggctaaaaga
gaacagcgggctccagttagtgacaggaatgatagatttagctcagatcaaggtaagggt
caggaaatgatgggttcagttggtggaccagatggagtacatatgcaaatagggaaatct
gaacacgataaccagtttggtgctggaaacagccaaaaaaatgaggaaagcgaaagtgag
gatgaagcaccaagaagatcaagacatggggatggaaagaagaagaggcgggatgttgat
gaagatgctgcaactggctcagaaaataggtgtcagtaa
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