Solanum tuberosum (potato): 102581609
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Entry
102581609 CDS
T02981
Name
(RefSeq) general transcription factor IIH subunit 2-like
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
sot
Solanum tuberosum (potato)
Pathway
sot03022
Basal transcription factors
sot03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sot00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
102581609
09124 Replication and repair
03420 Nucleotide excision repair
102581609
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sot03021
]
102581609
03400 DNA repair and recombination proteins [BR:
sot03400
]
102581609
Transcription machinery [BR:
sot03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
102581609
DNA repair and recombination proteins [BR:
sot03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
102581609
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
IBR
Motif
Other DBs
NCBI-GeneID:
102581609
NCBI-ProteinID:
XP_006363938
LinkDB
All DBs
Position
Un
AA seq
414 aa
AA seq
DB search
MNNEEKRFNQEEEDEEENGRGREAWERTYADERSWESLQEDESGLLRPIDNTTLSHAQYR
RRLRTATAARIQKGLIRYLYIIIDLSRAAAEMDYKPSRMVVVARQVEAFIREFFDQNPLS
QIGLVILKDGVAHCLTDLGGSPEAHIKALMGKLGTSGDASLQNGLDLVCDLLNQIPSYGH
REALILYSALSTCDPGDILETIQKYKASKIRCSVIGLSAELYICKHLCQETGGMYFVALD
EPHLKELVLEHAPPPPAIAEFAVANLIKMGFPQRTAEGVISICSCHKEAKVGGGYTCPRC
KARICELPTECCICGLTLVSSPHLARSYHHLFPIRPFDDVSPSALKDFHKLPKNCFGCQL
SLLNPGNLPGPQVACPNCKQHFCLDCDIYIHESLHNCPGCESLRNSKTISDMEE
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
atgaacaatgaagaaaaacgatttaatcaagaagaggaggatgaggaggaaaatgggaga
ggtcgagaagcatgggaaagaacttatgcagatgaaagatcatgggagtctttgcaagag
gatgaatcaggtctccttcgtccaattgacaacacaactctatcccatgctcagtatcga
cgacgtctccgcactgcaactgctgcacgaattcagaagggtctgattcggtacctctac
attatcattgatttgtccagggcagctgcagaaatggattataaaccaagccgaatggtt
gtagttgctagacaagtggaggcttttataagagaattttttgaccagaatcccctgagt
caaattggcttggtgatcttgaaagatggagtagctcattgcttaacagatcttggtggc
agtcctgaggctcatatcaaagcattgatgggtaaattggggacctcgggtgatgcatcc
cttcagaatggcctagatcttgtgtgtgatctcctaaatcaaatcccatcgtatggtcat
cgtgaagcccttatcttgtattcagctcttagcacatgtgatccaggggatatactggaa
accatccaaaaatacaaagcgtccaagataaggtgctcagtaattggtctctctgcagaa
ctctacatatgcaagcatctctgccaagaaactggtggaatgtattttgttgcattggat
gagcctcatttaaaagagttggtattggagcatgccccacctcctccagctattgcagag
tttgctgttgcaaatttgatcaagatggggttcccccaaagaacagcagagggtgtcatt
tcaatttgttcatgtcataaagaggctaaagttggcggtggatacacttgtccaagatgc
aaagcacgaatatgtgagcttcctaccgagtgttgcatctgcggactgacccttgtatct
tctccacatttggcaaggtcatatcaccatctcttcccaataaggccatttgatgacgtg
tcaccctcagctctgaaagattttcacaagttaccaaagaattgctttggttgccaactg
agtcttctaaatcctggaaatttgccaggtccgcaggttgcttgtccaaactgcaaacaa
cacttctgccttgattgtgatatttatatacatgagagcttgcacaattgtccaggttgt
gagagcttaaggaattccaagaccattagtgatatggaagaatga
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