Solanum tuberosum (potato): 102582676
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Entry
102582676 CDS
T02981
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3-I
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
sot
Solanum tuberosum (potato)
Pathway
sot03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sot00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
102582676
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sot03021
]
102582676
03019 Messenger RNA biogenesis [BR:
sot03019
]
102582676
Transcription machinery [BR:
sot03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
102582676
Messenger RNA biogenesis [BR:
sot03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
102582676
U7-dependent histone pre-mRNA processing factors
102582676
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B
Lactamase_B_6
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
Motif
Other DBs
NCBI-GeneID:
102582676
NCBI-ProteinID:
XP_006357977
UniProt:
M0ZJ54
LinkDB
All DBs
Position
Un
AA seq
695 aa
AA seq
DB search
MASTGQPQSSLKRPNPGVNRDGDKLVITPLGAGNEVGRSCVFMTFKGKTIMFDCGIHPGY
SGMSALPYFDEIDPSSIDVLLVTHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLL
SDYVKVSKVSVEDMLFDEHDILRSMEKIEVIDFHQTMEVNGIRFWCYTAGHVLGAAMFMV
DIAGVRVLYTGDYSREEDRHLRAAETPQFSPDVCIIESTYGVQLHMPRQIREKLFTDVIH
STLMQGGRVLIPAYALGRAQELLLILEEYWSNHPELANFPIYYASPLARRCMAVYQTYIN
AMNERIRNQFVSSNPFNFKHISSLNSIEDFIDNKPCVVMASPGSLQSGLSRQLFDKWCSD
KKNACVIPGYVVEGTLAKTIINEPKEVTLTNGLSAPLNMQVHYISFSAHADYAQTSTFLK
ELMPPNIILVHGASNEMDRLKQKLTSLFADGNTKIITPKNCQSVEMHFNSEKMAKTIGKL
AEKTPEAGEIVSGLLVKKGFTYQIMAPDDLHVFSQLSTANVTQRITIPYSGAFAVIQHRL
KQIYESVESSTDEESGVPTLRVHERVTVKQESENHLSVHWTADPICDMVSDSVVALVLNA
SREMPKVSIDSETSINEEEDAKKTEKIVHALLVSMFGNVKFGDDGKLIINFDGILAHLDK
QTGDVECENEALKERVKTAYWRIRSAVKPIPLSVS
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
atggcatctacgggacagccacagtcttctttgaagagacctaatcctggagttaataga
gacggagataaactggttatcactcctttaggggctggaaatgaagtgggacggtcctgt
gttttcatgacttttaaagggaaaacaatcatgtttgattgtggcattcatccgggttac
tcaggcatgtctgccttaccctattttgatgaaattgatccttcatctattgatgttctt
cttgttacccattttcacttggatcatgctgcatcccttccttattttctcgaaaagact
acatttaaagggcgtgttttcatgacacatgccacaaaggccatatacaagttgcttttg
tcagattatgttaaagttagcaaagtctctgttgaagatatgttgtttgatgaacatgac
attcttcgctccatggaaaaaattgaggttattgacttccatcagactatggaagtaaat
ggtattcgcttttggtgttatactgccggccatgtccttggtgctgccatgtttatggtt
gatattgctggtgttcgagttctctatactggagactattcccgtgaagaagacaggcat
ctccgcgcagctgagaccccacaattttctccagatgtttgcattatagaatcaacttat
ggtgttcaactccatatgccccgtcagataagagagaagcttttcactgatgttatacat
tcaacactgatgcaagggggtcgggtgctgattcctgcttacgccttgggacgtgcacag
gaacttctccttattctggaggaatattggtctaaccatcctgaactagctaacttcccc
atatattatgcttctccacttgcaagaaggtgcatggctgtctatcagacttacatcaat
gccatgaatgaaaggatccgcaatcaatttgtcagctcaaatcccttcaatttcaaacat
atatcttccctgaacagtattgaagattttatagacaacaagccatgtgtggtgatggca
agtccaggtagtcttcaaagtggtttgtcgaggcaactgttcgataaatggtgctctgac
aagaaaaatgcttgtgtcatacctgggtatgtagtggaagggaccttggcgaagaccatc
atcaatgaaccgaaggaagtcactctcacaaatggcttgtctgctccacttaatatgcag
gttcattatatttcattctcagctcacgcggattatgctcagacaagtacattcttgaaa
gaacttatgcctcccaacataattctagtccacggagcatctaatgagatggatagactc
aagcagaaacttacctccctctttgctgatgggaatactaaaattatcactcccaagaac
tgccagtcagttgaaatgcacttcaactctgagaaaatggcaaaaaccattggaaagctg
gctgaaaagacccctgaagcgggcgaaattgtcagtggtttacttgtgaagaaaggtttc
acttaccagatcatggcacctgatgatctccatgtcttttctcagctatccactgcaaat
gtcacacagagaataactatcccctattcaggtgcttttgctgttatacaacacaggctt
aagcagatctatgaaagtgtagagtcctcaacagatgaggaatccggtgtaccaactttg
cgggtgcatgaacgagtgacggtgaagcaggagtcagagaatcatctctccgttcattgg
acagcagatccaatttgtgacatggtatctgactctgtcgtggcattggttctgaatgcc
agcagggagatgcctaaagtatcaattgactcggaaacttccattaatgaggaggaagac
gcaaagaaaactgagaaaatagtccatgcactcctggtttctatgtttggtaatgtgaaa
tttggggacgatggtaagctgataatcaattttgatgggattttggctcatctggacaaa
caaactggtgacgttgaatgtgaaaatgaagctctcaaggagagagttaagactgcatac
tggcgaatcagaagtgctgtgaaaccaataccgctttctgtatcttag
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integrated database retrieval system
