Solanum tuberosum (potato): 102582880
Help
Entry
102582880 CDS
T02981
Name
(RefSeq) Fanconi anemia group J protein homolog
KO
K15362
fanconi anemia group J protein [EC:
5.6.2.3
]
Organism
sot
Solanum tuberosum (potato)
Pathway
sot03440
Homologous recombination
sot03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
sot00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
102582880
03460 Fanconi anemia pathway
102582880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sot03400
]
102582880
Enzymes [BR:
sot01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
102582880
DNA repair and recombination proteins [BR:
sot03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
102582880
FA (Fanconi anemia) pathway
Downstream FA components
102582880
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
HBB
Pex19
zf-CCHC_4
Cep192_D6
DUF4230
Motif
Other DBs
NCBI-GeneID:
102582880
NCBI-ProteinID:
XP_006351388
LinkDB
All DBs
Position
Un
AA seq
1275 aa
AA seq
DB search
PPPPSSSSAATQGFKPSKHVVHIGGIPVEFPYQPYGTQLAFMNRVIVTLDRAHRDGHSHA
LLESPTGTGKSLSLLCSTLAWQQNCKSKNRYSNFTHSKPDPQALADPIGHGGGFIPETQP
SGNPDTAPPAASNGTKKKKAAPTIFYATRTHSQISQVIREYRKTSYRVPMAILASRKHYC
TNVNVRGADNIDEKCKLLLKDQEAGCSEFKNTHKVKGHPSIQKGGCHEAHDIEDLVKVGQ
IVKGCSYFGARSMVDDAELVFCPYNYIINPVVRRAMEVVIKGAIIILDEAHNIEDICRDA
GSVDVEEDILLQLQMELEQLIQSDTMIYQPLVEMTQDIRSWIARKKNTLEKHGFQHYASC
WTGDKALKELQEANVTKQCFPILQECASKAIRAASEAEPGIDHLSGMAASVLEGLVSSLS
YFFSGDGLHVCDYQLALQHYVKKSPGTAVGSWTQTFSLWCLNPAVVFREIADSCLSVILT
SGTLSPMDSFSSELGVTFGTSLEAPHVIDVESQLWAAVISRGPRNYPLNASFKTADSYAF
QDALGTSLEEICKIVPGGCLVFFPSYKLMDKLSSRWKETGQWARLNARKPIFTEPRGGQE
EFESVLKGYYSSINQREKLVMGRKKKAKGSALSDGTPLEVSNENKKEGAAFLAVCRGKVS
EGIDFSDEKARVVIIVGIPFPNINDMKVDLKKKFNNTYKSSKNLLSGSEWYCNQAFRALN
QATGRCIRHRFDYGAVIFLDERFCEARNRAYISKWLRNSIRHHSGFDKSMEELKSFFRDV
KERVGKAASSIQSSVVDVEENAFVTKSIRTRQKNQKFSTSDVKGLKEEENGALICQKAPL
LCQSSCFDTMYNTSSTKMRIDAPHLMLSDDEDSDGRRGYIDLECDSAFSSRFSGDPLIVS
HAADPQLTIVKETPATDDIIHISSPQSFSKDEYSSSTIIQASSDLSDHLANHPTTQQKTE
LGCKSPCLTITPQKDVYTKANMISFDVESPINSSVNSHVGKRIKRLDLSSIVHLDAEEFD
TQMTKIPMHDSSTCRSRKIKDANQIDSSSRISQLDKELEKSKSPWSSVLNNCETSVVQSN
LAMYERLQIFCSLCNNPLGLPENNLFVMCSRTLSTKTHLKSLWKGQPETPDPSRHSIPIL
IANFSSVDQRIYERSSDNLSVQGIWCKEDGCVFKTIFCPFCVNSRHCLGVQVMASDASNV
QLLNKVLLYCDCLVIKEPEASRKELSPSNNSSSDRGLNSIESFTFTPEQQNLGGWRTTKS
KMRLPKRSISSSAHR
NT seq
3828 nt
NT seq
+upstream
nt +downstream
nt
ccgccgccgccgtcgtcgtcgtcggcggcgacgcaaggttttaaaccgtcaaagcatgtg
gtgcatataggtggtattccggtggagttcccttaccaaccctacgggacacagttagct
ttcatgaatcgagtcattgtgacacttgatcgagcacatagggatggacattctcatgcg
ctgctcgagtctcctaccggtactggaaagtcgctttcccttctttgctcaactcttgct
tggcagcagaactgcaagtcgaagaatcgttattctaattttactcactctaaacccgat
ccgcaagccctagctgatcctattggtcacggcggcggatttattcctgaaacgcagccc
tcaggcaacccggacacagcgccacctgctgcaagtaatgggacgaaaaagaaaaaagcg
gcaccaaccatcttttatgccacgaggacacattcacaaatttctcaagtgattcgggaa
tacagaaagacaagttatcgggtgccaatggctatactggcttcacgaaaacactactgt
acaaatgtgaatgtacgaggtgcagacaacattgatgaaaaatgcaagttgttattaaag
gatcaggaggctggatgctcagaattcaaaaatactcataaagtaaaaggtcatccatcc
attcagaaaggagggtgccacgaggctcatgatattgaagatcttgttaaagttggacaa
attgttaaaggctgttcttactttggagcacgttccatggttgatgatgcggagttagtg
ttctgtccatacaactatatcatcaatccagttgttagaagagcaatggaagtagttata
aaaggagccatcattattctcgatgaagcccacaatatagaagacatttgtcgtgatgct
ggtagtgttgatgttgaggaggatattttgcttcagttgcagatggaactggagcaactc
atacaatctgatacaatgatttaccaacctttggtagaaatgacacaggacataaggagt
tggattgctaggaagaaaaatactttagaaaagcacggcttccaacactatgcctcatgt
tggactggtgacaaggccttgaaagagctacaagaagccaatgtgacaaagcagtgcttt
ccaattttacaggaatgtgcctcgaaggccatcagagctgcctctgaagctgagccaggg
atagatcatttgagtggcatggcagcatctgtattagaaggactagtctcctcacttagt
tacttcttctcgggagatgggcttcatgtgtgtgattatcagctagctttacaacactat
gtcaagaaaagtcctggaactgctgttggtagctggacacaaacttttagtttgtggtgc
ctaaatccagccgttgtgttcagagaaattgctgattcttgtctatcagtgatcctaaca
tcagggactctatcaccaatggattcattttcctctgaacttggtgttacttttggtact
tctctggaagctccacatgttatagacgttgaatcacagttatgggctgctgtaatctca
agaggaccaagaaattatccgttgaatgcaagtttcaaaacagctgattcatatgctttt
caggatgcacttggcacatctttggaggaaatatgcaagattgttccaggtggttgtcta
gtattttttcctagctataagctgatggacaaactaagcagtcgctggaaagaaacaggt
caatgggcccgacttaatgctcgaaagcccattttcactgagccaagagggggtcaagaa
gaatttgaatcagttttgaagggttactacagttctattaaccaaagggagaaactagtg
atgggaagaaagaagaaggcaaaagggtcagctcttagtgacggtactccacttgaagtt
tcaaatgaaaacaagaaagagggagctgcttttcttgctgtttgtcgaggaaaggtttct
gaaggcatagacttttctgacgagaaagctcgtgtagttataattgttgggattcccttt
ccaaacataaatgatatgaaagtcgatcttaagaagaagttcaacaatacttataagtca
tccaaaaatcttctgagtgggagtgagtggtattgtaatcaagccttcagagctcttaac
caggctacaggtcgttgcattcgccatagatttgactatggagctgtgatctttttagat
gaacgtttctgtgaggcaaggaatagagcttatatttcaaagtggttgcggaattcaata
agacaccacagcggctttgacaagtcaatggaagagctgaaatcctttttcagagatgtc
aaagagcgtgttggcaaggcagccagttccatacaaagttctgttgttgatgttgaagaa
aatgcttttgttaccaagagtataagaaccaggcagaaaaaccagaagttcagcacttct
gatgtgaaagggcttaaggaggaagaaaatggtgcattgatttgtcaaaaagctccgctc
ctatgtcaatcttcatgttttgataccatgtataatacatcctccactaaaatgagaatt
gatgcccctcatttgatgttaagtgatgatgaggattctgatggtcgcagaggttacatt
gatttggaatgtgattcagcattttcatctaggttctctggagatccattgatagtttca
cacgctgctgaccctcaattaactattgtaaaagaaactcctgctactgatgacattatt
cacatttctagtcctcaatccttctccaaggatgaatattcttcctccaccatcattcaa
gcatctagtgacctttcagaccacttggcaaatcatcctacaactcaacaaaaaactgag
ttgggttgtaaatctccctgtttgacgattactcctcaaaaagatgtctatacaaaagca
aacatgatatcatttgatgttgaatcgccaattaactcgagcgtcaattctcatgtcggg
aaaaggataaaacgtctggatttgtcatccatagttcatcttgatgcagaagaatttgat
actcagatgaccaagattcctatgcatgatagttctacatgtagatcaaggaagattaaa
gatgcaaaccagattgattctagttccagaattagtcagttagacaaggaactggagaag
tccaaatctccttggtcatcagtcctgaataactgtgagacatcagtcgtgcagtctaat
cttgctatgtacgaaagacttcagatattttgctcactttgcaacaatccactagggctt
cctgagaataatttatttgttatgtgctcacgaactttgtcaacaaaaactcacttaaaa
tctctttggaagggtcaaccagaaacccctgatccgagcagacatagtatacctattctc
atagctaacttttcgtctgttgatcaacgcatctatgaaagaagcagtgacaatttatct
gttcaggggatttggtgcaaagaagatggttgtgttttcaaaactattttctgtcccttc
tgtgtaaattccagacattgtcttggggtacaggtcatggcttctgatgcgtctaatgtc
cagttactaaataaggtgctgctttattgtgattgcttggtgataaaggagcctgaagca
tcaagaaaggaattatctccatccaacaattcaagctctgacagaggtcttaattccatt
gagagtttcacatttactcctgaacagcagaaccttggaggatggagaactacaaaatcc
aagatgcgattaccaaagaggagcatctcatctagtgcacataggtga
DBGET
integrated database retrieval system
