Solanum tuberosum (potato): 102583224
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Entry
102583224 CDS
T02981
Name
(RefSeq) cleavage stimulation factor subunit 50
KO
K14406
cleavage stimulation factor subunit 1
Organism
sot
Solanum tuberosum (potato)
Pathway
sot03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sot00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
102583224
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sot03019
]
102583224
Messenger RNA biogenesis [BR:
sot03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
102583224
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_THOC3
WD40
WD40_Prp19
Beta-prop_WDR3_1st
Beta-prop_WDR36-Utp21_2nd
Beta-prop_EML_2
Beta-prop_WDR3_2nd
WD40_WDHD1_1st
WD40_CDC20-Fz
WDR55
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
WD40_Gbeta
Beta-prop_CAF1B_HIR1
ANAPC4_WD40
Beta-prop_WDR36-Utp21_1st
Beta-prop_TEP1_C
NBCH_WD40
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
Beta-prop_Aladin
Beta-prop_WDR75_1st
Beta-prop_EIPR1
WD40_RFWD3
Beta-prop_DCAF4
Beta-prop_SCAP
Ge1_WD40
Cytochrom_D1
Beta-prop_NOL10_N
Beta-prop_NWD2_C
Beta-prop_VPS8
Beta-prop_WDR41
Motif
Other DBs
NCBI-GeneID:
102583224
NCBI-ProteinID:
XP_015167117
LinkDB
All DBs
Position
Un
AA seq
437 aa
AA seq
DB search
MGSNHNNDNLEHKLQAGKLFRHVNSLIVAHLRDNNLNQAASAVASATMTPMSVEAPPNKL
LELVAKGLAVDKDETLRGVSTAVPFDPIVTAGYGSIPAPRAASVDFSSMNDTKGPSKNIP
KHESRHISEHKNVARCARFSPDGRFLATGSADTSIKLFEIAKVKQMMQPEARDGPVRPVI
RTFYDHQQPINDLDFHPQNTVLISGSKDRTIKFFDFSKTVAKRAFRVIQDTHNVRSVSFH
PSGDYLLAGTDHSIPHLYDINTFKCYLPPNFQDMGVNGAINQVRYSSTGGMYVTASKDGA
IRLWDGVTASCVRSIDGAHGAAEATSANFTKDQRYILSSAKDSSVKLWEVGTGRLVKQYL
GATHTQLRCQAVFNDTEEFVLSIDESLNEIVAWDSLTTEIVARWPSNHIGAPRWLEYSPV
EAAFVSCGIDRSIRHWT
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
atggggagcaaccataacaatgataacttggagcacaaattgcaagccgggaaattgttc
cgtcatgttaattctctcatagtcgctcatcttcgcgataataatctcaatcaggctgca
agtgctgtagcttcagctacaatgacaccaatgagtgttgaagctcctcccaacaagcta
ctggaattggttgcaaagggtcttgcagttgacaaagatgaaacactgagaggagtttct
acagctgtaccttttgatccaatcgtaactgctggatatggctcaatcccagcccctcgg
gctgcatctgttgatttcagtagcatgaacgatacaaaagggccgtcaaaaaatatccca
aagcatgagtcacgacatatttctgagcacaagaatgttgcaaggtgtgccagatttagc
cctgatggaagatttcttgctactggaagtgcagacacatcaattaaattgtttgagatt
gcaaaagttaagcaaatgatgcagccagaagcaagggatggcccagtgaggcctgttata
cggactttttatgatcatcaacaacctataaatgacttggattttcatccacaaaataca
gtactcatatctggatcaaaagatcgcaccatcaagttctttgatttttccaaaacagta
gcaaagagagcatttagagtgattcaggatacacataatgtaaggtcggtgtcatttcat
ccttccggggactatcttctggcaggaactgatcattcaattccccacctatatgacatt
aacactttcaaatgctacctgccaccaaatttccaagatatgggtgtcaatggtgctatt
aatcaggttaggtattcatctaccggtggaatgtatgtaactgcatccaaagatggtgca
attcggttatgggatggggtaacagctagctgtgtgcgatctatagatggtgcacatgga
gcggcagaggctacaagtgcaaatttcacaaaggatcaaaggtatatcctctcttcagca
aaagactcttcggtgaagctttgggaagttggcacaggaagattggtcaaacaatatctt
ggagctacacatacacagttgcgctgccaggctgttttcaatgatacagaagaatttgta
ttatcaattgatgaatctctaaatgagattgttgcatgggattctctgacaacagaaata
gtggctagatggccctccaaccatattggtgcaccccgttggcttgagtattccccagta
gaagctgcatttgtgtcttgtgggattgaccgatccattcggcactggacttag
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