Solanum tuberosum (potato): 102584740
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Entry
102584740 CDS
T02981
Name
(RefSeq) ATP-dependent RNA helicase DHX36
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
sot
Solanum tuberosum (potato)
Pathway
sot03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sot00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102584740
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sot03019
]
102584740
03012 Translation factors [BR:
sot03012
]
102584740
Enzymes [BR:
sot01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
102584740
Messenger RNA biogenesis [BR:
sot03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
102584740
Translation factors [BR:
sot03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
102584740
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
nSTAND3
NACHT
SR-25
AAA_19
Motif
Other DBs
NCBI-GeneID:
102584740
NCBI-ProteinID:
XP_006348571
LinkDB
All DBs
Position
Un
AA seq
975 aa
AA seq
DB search
GGGGRGGGGRGGGGRGGEQRWWDPVWRAERLRQQAAEMEVMNENEWWGKMEQFKRGGEQE
MVIRRNFSRDDQQKLSDMAYQLELYFHAYNKGKALVASKVPLPSYRADLDERHGSTQKEI
RMSTEIEERVGNLLSSSQDTVSAGTSSSTSGNSAKLSSKAVETAKPKLTIEDDTATKTLN
VELKQKQEKTRESEKVKAMISFREKLPAFKVKSEFMEAVANNQVLVVSGETGCGKTTQLP
QFILEEEISSLRGVDCNIICTQPRRISAISVAARICSERGESLGDTVGYQIRLEAKRSAQ
TRLLFCTTGVLLRRLVQDPDLTGVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLIL
MSATINAELFSQYFRDAPTIHIPGLTYPVEELFLEDVLEKTRYLIKSEADNFQGNSRRRM
RQQDSKRDPLTDLFEDVDISSHYKGYSMTTRQSLEAWSGSQLDLGLVEASIEYICRCEGE
GAILVFLAGWDEISKLLDKIKANNFLGDTRKFLVLPLHGSMPTVNQREIFDRPPANTRKI
VLATNIAESSITIDDVVYVIDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRVQ
PGVCYRLYPKLIHDAMAQYQLPEILRTPLQELCLHIKSLQFGAIESFLAKALQPPDALSV
HNAIELLKTIGALDDTEELTPLGRHLCTLPLDPNIGKMLLMGSIFQCLNPALTIAAALAH
RDPFVLPLNRKEEADAAKRSFAGDSCSDHIALLKAFEGWKDAKRYGKERTFCWENFLSPV
TLQMMEDMRNQFVDLLSDIGFVDKSRGAKAYNEYSNDLEMVCAILCAGLYPNVVQCKRRG
KRTAFYTKEVGKVDIHPASVNASVHLFPLPYLVYSEKVKTSSIYIRDSTNISDYSLLMFG
GNLTPSKSGDGIEMLGGYLHFSASKSVLDLIKKLRVELDKILKRKIEEPHFDVSVEGKGV
VAAVVELLHSQDIRY
NT seq
2928 nt
NT seq
+upstream
nt +downstream
nt
ggcggtggaggccgtggtggcggtggtcgtggaggaggaggacgtggtggtgaacagaga
tggtgggatcctgtatggcgtgctgaacgacttaggcaacaggcagctgagatggaggtg
atgaatgagaatgagtggtgggggaagatggagcagtttaagagaggaggcgagcaggaa
atggttataaggcggaattttagtagggatgaccaacagaagttgtctgatatggcgtat
caattagaactttacttccatgcttataacaagggaaaggcacttgttgcaagcaaagtc
ccattgcctagctatcgtgctgatcttgatgagcgtcatggatctacacagaaagagatt
aggatgtctacagagattgaggaaagagtcggaaatctattgagtagttcacaggacaca
gtatctgctgggacttcctcttcaacatctggtaattctgccaaattatcatccaaagct
gtagaaacagccaaacccaagttgactatagaggatgatactgccaccaaaacacttaat
gtggaacttaaacagaaacaggaaaagacgagggaaagtgaaaaagtcaaggcaatgatc
tcattcagagaaaaacttccagcatttaaagtgaaatctgaatttatggaagctgttgca
aataatcaggtcttggtagtttctggagagactggttgtggaaagacaacccagctccct
caattcattctagaagaggagatatcatcccttcgtggtgttgattgtaacattatatgc
acacagcctcgccgtatatctgcaatatcagttgctgctcgaatatgctctgaaagagga
gagagtcttggtgatactgttggctaccagattcggctggaagcaaagcgctctgctcaa
acacggttgctattttgcacaactggagtgttactgcggcggctggttcaggaccctgat
ttgactggtgttagccatctgcttgttgatgaaatccatgaaagaggcatgaatgaagac
ttcctcttgataattttacgtgacctgcttcctcgacgacctgatttgcgtctcattctg
atgagtgctactattaacgctgagttattctcccaatacttcagagatgcacccacgatt
catataccgggtttgacatatccagtggaagagctgtttcttgaagacgtgttggagaag
actcgttaccttataaaatccgaagcagacaatttccaaggaaactcaaggagaaggatg
aggcaacaagattctaaaagagatccgctgactgatctttttgaggatgtggacattagt
tcacattacaaaggctacagcatgactacaagacaatctctggaagcatggtctggttca
cagcttgatttgggtcttgtggaagcatcaattgaatatatttgtcgctgtgaaggtgaa
ggtgcaattcttgtgttcctagctggttgggatgagatttctaagctacttgataaaatt
aaggctaacaacttccttggagacaccaggaagtttttagtcctccctcttcacggttca
atgccaacagtaaatcaacgagaaatatttgatcgtccacctgctaacacgaggaaaatt
gtgcttgcaaccaacatagctgagagcagtataactatagatgatgtcgtgtatgtcata
gactgtgggaaggcgaaagagactagctatgatgcactgaacaagctagcttgtttatta
ccatcatggatttcaaaggcctcagcacatcagaggcgcggtcgtgcgggccgtgtacaa
cctggagtttgttataggttgtatccgaaactaatacatgatgctatggcacaatatcaa
ctacctgagattcttcgaacaccattacaagagctttgtctccatattaagagtttgcag
tttggcgccattgaatcctttttggccaaggcacttcaacctccggatgctctctctgtc
cacaatgctattgaacttctcaaaactattggagctctggatgatacagaagaacttact
ccacttggacgccatctttgcactctaccgctggatccaaatattggaaagatgcttctg
atggggtccatcttccaatgtctgaaccctgcactgactattgctgctgctctggcacac
cgtgatccatttgtccttccattaaacaggaaagaggaagcagatgctgctaaaagatcc
tttgctggtgattcttgcagtgatcatattgcacttctgaaagcatttgaaggatggaaa
gatgctaaacgttatggaaaagaaagaaccttctgttgggaaaatttcttatctcctgta
accttgcagatgatggaagacatgagaaatcagtttgttgacctactgtcagatattggt
tttgtggataaatcacgaggagccaaggcatacaatgaatatagcaatgatttagagatg
gtatgtgccatcctttgtgcgggactctacccaaatgtcgtgcagtgtaaaagaagagga
aagcgtacagcattttacacgaaggaagttggaaaagtagacatccacccagcatctgtt
aacgctagtgttcatcttttccctcttccctacttagtttacagtgagaaagtcaagacc
tcaagcatttatatcagagattcaacgaacatatccgattattctctccttatgtttggg
ggtaatctcactccaagcaaaagtggagacggcattgaaatgcttggaggctatcttcac
ttttccgcgtcaaaaagtgtgttggatttaataaagaaactgcgagtggaactggataaa
atattaaaaaggaaaatcgaagagccccactttgacgtctcagtcgagggaaagggtgta
gttgctgctgtggttgagttacttcatagtcaagacatacggtactaa
DBGET
integrated database retrieval system
