Solanum tuberosum (potato): 102584978
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Entry
102584978 CDS
T02981
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 46-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
sot
Solanum tuberosum (potato)
Pathway
sot03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sot00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102584978
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sot03041
]
102584978
03009 Ribosome biogenesis [BR:
sot03009
]
102584978
Enzymes [BR:
sot01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
102584978
Spliceosome [BR:
sot03041
]
Complex A
U1 snRNP components
U1 related factors
102584978
Complex B
102584978
Ribosome biogenesis [BR:
sot03009
]
Eukaryotic type
Pre-60S particles
Helicases
102584978
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
102584978
NCBI-ProteinID:
XP_006337974
LinkDB
All DBs
Position
Un
AA seq
1165 aa
AA seq
DB search
MTTPEAATASLGPRYAPDDPNLPQPWKGLVDGSTGLLYFWNPETNVTQYEKPSALPPPLP
PGPPPEASAPKLAPIPGASTVQQYDSQGQQNQQAFAQQGQMTHMSQHPQVTQQVPHGSQG
VSTGQQQGSPAGPAMQQVSFMPQLRSQMIQQPGHQMPLQMGQTPNQPGPHVSQPAVQQIM
PQQLGSQAQAFPSVQMGQPHGYQFSHQQAQHVAYPQNLPPQGQQIPQQQNQHVPQNQQFS
HQQEHKVGFQQREDVDFPQGKQVGFSPQQVQQTGASSAQNPQVGTGSVIRPQMSAQPAQA
LQFGGSSVNVQQPSSLGQWQQNTNDSGQRPPGPRFPGQMGSSMAHGHELDTPPVGSKGYE
ENTLGRGGNDYYYNSNMDSRIRPPPQQPKLAAIPVARNQHEMRMGDPPLQNPVPTLPSGF
NSMGGPPMQNIYGQAAGGPPFSNPNLMRPPGALTGPPGSIHPSSVEVYLQKHEVTATGGD
VPAPFMTFEDTGFPPEILREIQFAGFTSPTPIQAQTWPIALQNRDIVAIAKTGSGKTLGY
LIPAFVHLKRRHNNPQNGPTVVVLSPTRELATQIQDEALKFGRSARVSCTCLYGGAPKVH
QLKELERGTDIVVATPGRLNDILEMKRIDFRQVSLLVLDEADRMLDMGFEPQIRKIVNEI
PPHRQTLMYTATWPKEVRKIAGDLLRNPVQVNIGNVDQLAANKSITQYIEVVPQMEKQRR
LEQILRSQERGSKAIIFCSTKKLCDQLARSIGRNFGAAAIHGDKSQGERDWVLNQFRAGK
TPILVATDVAARGLDIPDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVSYTFLSDQDWK
YAPDLVKVLEGANQQVPPDVREMALRAGGRDRGGMNRSDLVDGDGVRTRWDSGGRGGMRD
GAFGGRGGMRDGGFGGRGMRDGGFGGPGGMRDGGFGGPGGMRDGGFGGRGGRESNFGGRG
GRDGHFGGRVGMRDNNFGGRGGRGGAQSVWDRNDRYDSSDVRGRGRGRGRGRFDNRRDMP
SRSRGRSYSPSPERVRTWGSRSRSRSRSRSRSYSRSYSRSRSRSYSPRRSRSRSRSRSRD
RYQRRPRQSKFDQMDPDPGMSSIQVAPPYVMPPLPIGAPVDGFSGAASVELKPNMEVAPE
SGMSPMSPGTRGNGLPGSEVIGQNP
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atgacaactcctgaggcagctacggcttccttgggacctcgttatgcacccgatgatcca
aatttaccccaaccttggaagggcttagttgatggtagtactgggttattgtacttctgg
aatccagaaactaatgttactcagtacgagaagccatcagctttacctcctccactgccg
cctggtccacctccggaagcttctgcacctaagttggctcctataccaggagctagcact
gtgcaacaatatgatagtcaaggccaacagaaccaacaggcgtttgctcaacaaggccaa
atgacacacatgtcacaacatccacaagtaacacaacaggtaccacatggatcacaaggt
gtttcaacagggcagcaacaaggatcaccagctggtcctgccatgcaacaggtatccttt
atgccacaacttcggtctcaaatgatccagcaacctggtcatcagatgccattgcaaatg
ggacaaactcccaatcagccagggccgcatgtttctcaaccagcagtacaacaaataatg
ccacaacaactaggctcccaagcacaagcattcccaagtgtacaaatgggacaaccacat
ggttatcaattttctcatcagcaggcacagcatgttgcgtatccacaaaatttgcctcca
cagggacagcaaattccacagcagcaaaatcagcacgttccgcagaatcaacagttttct
catcaacaagagcataaagtgggatttcagcaaagggaagatgttgatttcccccaaggt
aaacaagttgggttttcgccacaacaagttcagcaaactggtgcatcatctgctcagaat
ccgcaagtggggactggttctgttatcagacctcagatgtctgctcagcctgctcaagct
ttgcagtttggcggttcttctgtaaatgtccaacaaccatcatctttgggtcaatggcag
caaaatacaaatgattcaggtcagaggccgcctggtccacgctttcccggtcagatgggc
tcaagtatggcacatggtcatgagctggatacacccccagttggatcaaagggttatgag
gaaaacacactcggaagaggaggaaatgactattattacaacagtaacatggatagtcga
attaggcctccgcctcagcaacccaagcttgcagctatacctgtagcaagaaatcagcat
gaaatgagaatgggtgatcctccgcttcaaaatccagtaccaactcttcctagtgggttc
aatagcatgggtggtcctccgatgcaaaatatctatggtcaagcagctggtggccctcct
ttttcaaatcctaacctcatgcggccacctggagcactcacaggacctccaggatccatt
catccatcatctgttgaggtttacctgcagaagcatgaagtaactgcaacaggtggtgat
gtccctgctccattcatgacatttgaagatactggcttcccgccagaaatactaagagag
attcagtttgcgggattcacttcacccactcccatccaggcacaaacatggcccatagcg
ttgcaaaatagggatatagtggccattgccaagacaggttctggcaaaacattgggctat
ctaattcctgcatttgtccaccttaaacgacggcacaacaatcctcaaaatggcccgaca
gtggtggttttatctccaacacgagagcttgccacacaaatacaagatgaagcgctgaag
tttggtcgatctgcaagggtttcttgcacgtgcttgtatggaggtgcacccaaagttcac
cagttgaaagaactagagcgcggaacagatattgttgttgcaactcctggtcggcttaat
gacatccttgaaatgaaaagaattgactttagacaggtttctcttctcgtgctagatgag
gctgatcgaatgcttgacatgggttttgaacctcagatccgcaagattgtaaatgagata
cccccacatagacaaacacttatgtacacagcaacttggcccaaagaagtgcgaaaaata
gccggtgatcttcttcgaaatcctgtccaggttaatattggtaacgttgatcagcttgca
gcaaacaagtctatcacacagtacattgaagtagtcccgcaaatggagaagcagagacgg
ttggagcagattcttagatcccaagaaaggggttctaaagctattatattctgttccaca
aagaagttgtgcgaccaacttgcacgcagtattggtcgaaactttggagctgcagctatt
catggagacaagtcccagggtgagagggactgggttctcaatcaatttcgcgctggtaag
accccaattttagtagcaacagatgttgctgctagaggactggacatacctgatataaga
gtggtgatcaactatgattttccgactgggattgaggattatgttcaccgaattggaaga
actggtagggctggtgcaactggtgtttcatacacctttttatctgatcaggactggaaa
tatgctcctgatcttgttaaagttctggaaggcgcaaatcagcaagtgcctccggatgtt
agggagatggctttacgtgctggtggcagggatagaggtggcatgaaccgttctgatctt
gtcgatggtgatggtgtccgcacacgttgggattctggtggccgcggtgggatgagagat
ggtgcatttggtggccgtggcggaatgagggatggtgggtttggtggccgtggtatgagg
gatggtgggtttggtggtcctggtgggatgagagatggtgggtttggtggccctggtggg
atgagagatggtgggtttggtggccgtggtggaagggagagcaactttggtggccgtggt
ggaagggatggtcactttggtggccgtgttgggatgagggacaacaattttggtggccgt
ggtggcaggggtggtgctcaaagtgtttgggacagaaatgatcggtatgacagttcagat
gtgcgaggacgtgggagaggtcgcgggcgtggacgttttgacaatagaagagacatgcca
agtcggagtcgaggaagaagttacagccctagtccggagagagttcgaacatggggtagt
agaagcagaagcaggagtcgcagcagaagcaggagttatagtaggagttacagccgaagc
cggagtcgcagctacagccccaggcgcagtcgtagccgcagccgtagtcgtagtcgtgat
agatatcaaaggaggcctcgccaaagtaagtttgatcagatggatccagatccaggaatg
tcaagcattcaggttgctcctccatatgtgatgcctccattgcctataggtgcaccagtt
gatggattttctggagctgcgtcagtggaattgaaaccaaatatggaagtagccccagaa
tctggtatgtcacctatgtctccaggaactcgaggaaatggcttgccaggatctgaggtc
atagggcagaacccttga
DBGET
integrated database retrieval system
