Solanum tuberosum (potato): 102585273
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Entry
102585273 CDS
T02981
Name
(RefSeq) probable NOT transcription complex subunit VIP2
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
sot
Solanum tuberosum (potato)
Pathway
sot03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sot00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102585273
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sot03019
]
102585273
Messenger RNA biogenesis [BR:
sot03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
102585273
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
102585273
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
102585273
NCBI-ProteinID:
XP_006350738
UniProt:
M1CZ19
LinkDB
All DBs
Position
Un
AA seq
670 aa
AA seq
DB search
MSGLLNSSLNGSASNLPDNSGRSFPSSFSPQSGAASPLYHHSGSIQGLHNVHGSFNVPNM
PGTLGSRNTAINNVPTSGVQQSGNSLSGGRFASNNIPVALSQISQGSSHGHSGMTSRGGM
SVVGNPGYSSNNNGVGGSIPGILPTSAAIGNRSSVQGLGMSTILGNAGPRMSNSVGNIVG
GGNIGRNISSGAGLSVPGLGSRLNLTANTGSGNLNVQGSNRLMGGVLQQASPMSMFGNSY
PTGGGPLSQNHVQAVGNLNSMGMLNDVNSNDGSPFDINDFPQLSSRPSSAGGPQGQLGSL
RKQIAQQNQEFSIQNEDFPALPGFKGGNADYAMDLHQKEQLHDNTISMMQQQHFSPHDTA
PYLSLSKAQMGRSGGFNLGGTYSSLRSQQQQQHASSVSNSGLSFSNVNNQDPLHLHGSDV
FPSSHSSYHQQSGGPPGIGLRPLNSPSTVSGIGSYDQLIQQYQQQTQSQYRLPHMSAIGQ
PYREQGMKSMQAQAAPDPFGMLGLLSVIRMSDPDLTSLALGIDLTTLGLNLNSAENLHKT
FGSPWSDEPAKGDPEFTVPQCYYAKQPPPLNQAYFSKLQLDTLFYIFYSMPKDEAQLYAA
NELYNRGWFYHREHRLWFMRVANLEPLVKTNAYERGSYICFDPNTWETIRKDNFVLHYEM
LEKRPVLPQH
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgtcagggttactcaattcatctctgaacgggtcagcttcaaatcttcctgacaactcc
ggacgctcatttccttcatctttctctcctcaatcgggtgcagcctcccctctttatcat
cactctggaagtattcagggccttcataacgttcatggaagtttcaatgttcctaacatg
ccgggtacacttggttcaagaaacacagcaataaataatgtccctacaagtggagtccaa
caatctgggaatagcctctctggtggtcgttttgcatcaaataatattcctgtagccctt
tcacagatatcccagggaagttctcatggtcattctggcatgacaagtagaggtggtatg
agtgttgttggtaacccgggatatagtagtaacaataatggtgttgggggttctattcct
gggattcttccaacctctgcagcaattggtaatcgaagttctgttcaaggccttgggatg
tccacaattttgggaaacgcaggtccaaggatgtcaaattcagttggaaatatagtcggt
ggaggcaacattgggagaaacatcagctctggtgcaggattgtctgtgcctggtcttggt
tccagactaaatttgactgcgaacactggttctggaaatttaaatgttcaaggatctaat
aggctaatgggtggtgttctgcagcaagcctctccgatgtctatgtttggtaattcatat
cctactggcggtggtccactatctcagaaccatgttcaagcggttggcaaccttaattcc
atgggaatgctgaatgatgtgaattcaaatgatggatctccatttgatatcaatgatttc
cctcagctaagcagccgtcctagttctgctggagggcctcaaggacaattaggttcattg
cgaaaacaaattgctcaacaaaatcaagaattcagcattcaaaatgaagattttccggcc
ttgccaggatttaaaggtggaaatgctgattatgctatggatctacaccagaaagaacaa
cttcatgataatactatttctatgatgcagcagcagcacttctctcctcatgacactgcc
ccctatctctcattatctaaggcacagatgggcagatctggtggttttaacttgggaggg
acatactcatcgcttcgctcacagcagcagcagcaacatgcctcatcggtgagtaatagt
ggtctctctttttcaaatgtaaacaaccaggatccactacatttacatggttcagatgtc
ttcccgtcatcacactccagttatcaccaacagtctggtggacctcctggtattgggtta
cggcctctgaattctccaagtactgtttctggtattggctcatacgatcagcttatccag
cagtatcagcaacagactcaatctcaatatcgcctgccgcatatgtccgctataggccag
ccatacagggagcagggtatgaaatccatgcaggctcaagctgctcctgacccttttggt
atgcttggcttgctaagtgtaataagaatgagcgatccggatctgacttctcttgcactt
ggaatcgatcttacgactcttggattgaacttgaactctgctgaaaatttacacaaaacg
tttggttctccgtggtctgatgagcctgccaagggtgatccagaatttacggtaccacaa
tgttattatgccaagcaaccacctcctctaaatcaagcatacttttccaagcttcagtta
gacactttgttttacattttctacagcatgccaaaggatgaagcgcaattatatgctgct
aatgaattgtataaccgggggtggttttaccacagagaacatcgattgtggtttatgagg
gttgccaacttggagcctcttgttaagaccaacgcctatgagagaggatcttatatttgt
tttgatccaaacacatgggagacaatccgcaaggataatttcgtactccactatgaaatg
ttggaaaaaagacctgttctacctcagcactaa
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