Solanum tuberosum (potato): 102586003
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Entry
102586003 CDS
T02981
Name
(RefSeq) ATP-dependent RNA helicase DHX36-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
sot
Solanum tuberosum (potato)
Pathway
sot03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sot00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102586003
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sot03019
]
102586003
03012 Translation factors [BR:
sot03012
]
102586003
Enzymes [BR:
sot01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
102586003
Messenger RNA biogenesis [BR:
sot03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
102586003
Translation factors [BR:
sot03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
102586003
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
dsrm
DEAD
HA2_N
AAA_22
AAA_19
nSTAND3
Dicer_dimer
ATPase
AAA_11
T2SSE
NACHT
PhoH
Myosin_head
Motif
Other DBs
NCBI-GeneID:
102586003
NCBI-ProteinID:
XP_006360431
LinkDB
All DBs
Position
Un
AA seq
1183 aa
AA seq
DB search
MSLYPLQLLTYSSHYRNLKPFDISPLSLTMKDRPLSSCGAVYVPPHQRLRSVITVPSAVS
PQPGSFRPTAIDQKPNPNSLKSYACLPPQQQPVRLQHKRSSQFDEVSEEGGDIELTPYQG
AVTSDNTETWKWKLTGLLHNNDIQEVLSREKKDRRDYEQIAALASKMGLYSNLYSKVVVV
SKLPLPNYRFDLDDKRPQREVILPPGLPRRVDVFLGEYLSRNPRSTDVLSRSSSNGSIAT
DEGLFEQSEALPQSKASMKKIHWERSMQMQTEQQTWQESPEGRKMLEFRSSLPAYKEKDA
ILSAISQNQVVIVSGETGCGKTTQIPQFILESEIESIRGDMCSIICTQPRRISVMAVSER
VAAERGELLGETVGYKVRLEGVKGRDTHLLFCTTGILLRRLLVDRNLKGITHVIVDEIHE
RGMNEDFLLIVLKDLLPRRPELRLILMSATLDAELFSSYFDGAPLVHIPGFTYPVRTHFL
ENILEMSGYRLTPDNQIDDYGQERAWKMNKQAPRKRKSQIASAVEDTLRAADFQEFSPET
QESLSCWNPDCIGFNFIEYILCHICENERPGAVLVFMTGWDDISSLKDKLQAHPILGNTS
RVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNIAETSITIDDVVFVIDCGKAKETSY
DALNNTPRLLPSWISKVSARQRRGRAGRVQPGECYHLYPRCVYDAFADYQLPEILRTPLQ
SLCLQIKSLKLGSISEFLTRALQSPELLAVQNAVEYLKIIGALDENENLTVLGRYLTMLP
MEPKLGKMLILGAILNCLDPILTIVAGLNVRDPFLTPLDKKDLADAAKAHFSRDFSDHLA
LVQAYEGWRDAERDLAGYEYCWKNFLSAQSMKAIDSLRKEFYSLLNDTGLVDSNITMYNS
WSYDEHLLRAIICYGLYPGICSVLHNEKSFSLKTMEDGPVLLHSNSVNARDSRIPYPWLV
FNEKIKVNCVFLRDSTAISDSVLLLFGGTISKGEVDGHLKMLGGYLEFFMNPTIAEMYRS
LRRELDELIHTKLLNPRMDVHSYHELLSAIWLLISEDQCGGRFVFSHQILLPSKPCAGAP
PPAPTSRIESGPGGDNAKSQLQTLLNRAGYATPTYKSLQLNNNQFRATVEFNGMQIMGRP
CNNKKQAEKDAAAEALEWLLEGHRAGPDYIEQMSQFLKKSKKA
NT seq
3552 nt
NT seq
+upstream
nt +downstream
nt
atgagcctatatccactccaattgttgacatacagttcacattaccgaaaccttaaacct
tttgacatttcaccactgtcgttaacgatgaaggaccggccgctgtcatcatgcggcgct
gtttacgtccctccacatcaacgcctccgttcagtaatcactgttccctctgctgtttct
ccacaacctggcagctttcgtcctacagcaatcgatcaaaaacctaatcctaactctctc
aagtcctacgcttgccttccgcctcagcagcaaccagtgcgactgcaacataagagaagt
tcacaatttgatgaggtttctgaggaagggggtgatattgagcttacgccatatcagggt
gctgtcacatctgataacactgaaacatggaaatggaagctcactggtctgctacacaac
aatgatatacaagaggtgctctcaagggagaaaaaagataggcgtgattatgagcaaata
gcagctttagcaagcaaaatgggtttatatagcaacctatattcaaaagtagttgttgtc
agcaagcttccattacctaactacaggtttgatttggatgataagcgtcctcagagagag
gtgatcctgcctccgggtttacctagaagagtagatgtttttcttggagaatacttgtct
cgtaatccaaggagcacggatgtactttcacgatcaagcagtaatggcagtatagctact
gatgagggtctatttgagcagtcagaggcactccctcaaagtaaggcttccatgaagaaa
atccattgggaaaggagtatgcaaatgcagacagagcagcaaacttggcaggaatcacct
gagggtaggaagatgctggaatttcgtagtagtctacctgcgtataaggaaaaagacgca
atattaagtgccatttcacagaaccaggtggttattgtctctggtgaaactggctgtggg
aagaccacacagattccgcagtttattttagagtctgaaattgagtctattcgtggagac
atgtgcagtatcatatgtacacagccaagaagaatatctgttatggcagtatctgaaaga
gttgccgcggagagaggggagttgttgggtgaaacagttggatataaagttaggctagaa
ggtgttaaaggaagggacactcacctcctcttctgtacaactggtatcttgttaagaagg
ctactggttgatagaaatctgaagggaatcacacatgtaattgtggacgagattcatgaa
cgtggaatgaacgaagactttctgctaatagttctgaaggatttactcccacgtcggcca
gaattaaggttgatcttgatgagtgccaccttagatgcagagcttttctcttcatacttt
gatggggctccactagtccacattccgggatttacatatccagttcgcactcatttcctg
gaaaatattctggagatgtcggggtacaggttgacgccagacaatcagattgatgattat
gggcaggagagagcgtggaaaatgaacaaacaagctccaagaaaaaggaagagccagatt
gcttctgctgttgaggacaccctcagagctgctgatttccaagaatttagccctgagaca
caggagtctttgtcttgttggaatcctgattgtataggcttcaattttatagaatatatt
ctatgccatatttgtgaaaatgaaaggcccggtgctgttttagtttttatgacgggttgg
gatgacataagttctctgaaggataagctacaggctcatcctatcttggggaatacaagc
cgtgttttattgctggcatgccatggttctatggctagttcagagcagaggttaatattt
gacaagcctgaagatggagtaagaaagattgtgttagctacaaatattgctgagaccagt
atcacgattgatgatgtagtgtttgttattgactgtggcaaggcaaaagagacgtcatat
gatgcacttaataatactcctcgtttgcttccttcttggatttcaaaggtttcagctcgc
caaagaaggggacgagctggacgtgttcagccaggagaatgctatcatctttatcccaga
tgtgtatatgatgcttttgcagattatcaattaccagaaattctgaggactcctttgcaa
tccctttgtttgcaaattaaaagtttaaaactcggtagcatttctgagttcctcacgagg
gctttgcaatctcccgagttattagcggttcaaaatgctgttgagtatctgaaaatcatt
ggggctttagatgagaatgaaaatttgactgttctaggacgttacttaacaatgcttcca
atggagcctaaactggggaaaatgcttatacttggagcaattttgaattgtttggacccg
atattaactattgttgctggtcttaatgtccgagatcccttcttgacaccacttgacaag
aaagatcttgcagatgctgccaaggctcacttttcacgcgattttagtgaccatctcgct
cttgtccaagcatatgagggttggagggatgctgaaagagacctagctggatatgagtac
tgctggaagaattttctgtctgcacagtctatgaaagctattgattctcttcgcaaggag
ttttactctttgctgaacgacactggtcttgttgacagcaacattaccatgtataattct
tggagttatgatgagcatcttcttcgagcgattatctgctatgggttgtatcctggaatc
tgttctgtactgcataatgaaaagtcattttcattgaaaacaatggaagatggtccggtg
ctattacactcgaactctgttaatgcccgggactccaggataccatatccttggctggtg
ttcaatgaaaagatcaaagtaaactgtgtctttctacgggattctacagctatctccgac
tcagtgctgcttctatttggaggaaccatctcaaaaggggaagtggacggtcacttgaaa
atgttgggtggatacttagagttctttatgaaccctactatagcagaaatgtacagaagt
ctaagaagagagcttgatgagttaattcacactaaactcctgaatcctaggatggatgta
catagttatcatgaacttctgtcagcaatatggttgcttatctcagaggatcaatgcggt
ggcagattcgtttttagtcatcagattttacttccttccaagccatgtgctggagcacca
ccaccagctccaacgtcaaggatagaaagtggtccaggaggtgacaatgctaagtctcag
ctacagacgttgctgaatcgagcaggatatgcaacaccaacctacaagtcattgcaactc
aataacaatcagtttcgagcaactgtggagttcaacggaatgcagataatgggaagacct
tgcaacaacaaaaagcaagctgaaaaagatgcagcagctgaggctctggagtggttgttg
gaagggcaccgtgcaggtcctgattacattgagcagatgtctcagtttctgaaaaagagc
aaaaaggcatag
DBGET
integrated database retrieval system
