Solanum tuberosum (potato): 102586113
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Entry
102586113 CDS
T02981
Name
(RefSeq) pre-mRNA-processing-splicing factor 8-like
KO
K12856
pre-mRNA-processing factor 8
Organism
sot
Solanum tuberosum (potato)
Pathway
sot03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sot00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102586113
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sot03041
]
102586113
Spliceosome [BR:
sot03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
102586113
Complex C
U5 SnRNP specific factors
102586113
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
102586113
NCBI-ProteinID:
XP_006361638
UniProt:
M1CSW4
LinkDB
All DBs
Position
Un
AA seq
2389 aa
AA seq
DB search
MWSGNGQDMWNNSNIAPPGTSGGPPPPPSMMQPPPPPSSMMPPPPGTSSGHSMMPPGTSG
GGASGAGPPLPPPSYTVLPTEAQLEEKARKWMQLNSKRYSDKRKFGFVETQKEDMPPEHV
RKIIRDHGDMSSKKYRHDKRVYLGALKFVPHAVYKLLENMPMPWEQVRDVKILYHITGAI
TFVNEIPWVVEPIYLAQWGTMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYADNLLDVD
PLEPIQLELDEEEDSAVYNWFYDHKPLVKTKLINGPSYRRWHLSLPIMATLHRLAGQLLS
DLTDRNYFYLFDMESFFTAKALNMCIPGGPKFEPLYRDMEKGDEDWNEFNDINKLIIRSP
LRTEYRIAFPHLYNNRPRKVRLGIYHTPMIMYIKTEDPDLPAFYYDPLIHPIVTKDRREK
KVSDDDNDDDFALPEGVEPLLTETPIYTDTTAAGISLLFAPRPFNMRSGRTRRAEDIPLV
SDWFKEHCPPSYPVKVRVSYQKLLKCFVLNELHHRPPKAQKKKHLFRSLQATKFFQTTEL
DWAEAGLQVCKQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLC
REILRLTKLVVDANVQFRLGNVDAFQLADGLQYIFSHVGQLTGMYRYKYRLMRQIRMCKD
LKHLIYYRFNTGPVGKGPGCGFWAPMWRVWLFFLRGIVPLLERWLGNLLARQFEGRHSKG
VAKTVTKQRVESHFDLELRAAVMHDVLDAMPEGIKQNKARTILQHLSEAWRCWKANIPWK
VPGLPVPIENMILRYVKSKADWWTNVAHYNRERIRRGATVDKTVCRKNLGRLTRLWLKAE
QERQHNYLKDGPYVTPEEAVAIYTTTVHWLESRKFSPIPFPPLSYKHDTKLLILALERLK
ESYSVAVRLNQQQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIEFMDLYSYLIP
VYEIEPLEKITDAYLDQYLWYEGDKRHLFPNWIKPADSEPPPLLVYKWCQGINNLQGVWD
TSEGQCVVMLQTKFEKFFEKIDLTMLNRLLRLVLDHNIADYVTAKNNVVLSYKDMSHTNS
YGLIRGLQFASFVVQYYGLVLDLLLLGLTRASEIAGPPQMPNEFITYSDSRVETRHPIRL
YSRYIDKVHILFRFTHEEARDLIQRYLTEHPDPNNENMVGYNNKKCWPRDARMRLMKHDV
NLGRSVFWDMKNRLPRSITTLEWENSFVSVYSKDNPNLLFSMCGFEVRILPKIRMTQEAF
SNTRDGVWNLQNEQTKERTAVAFLRVDDEHMKVFENRVRQILMSSGSTTFTKIVNKWNTA
LIGLMTYFREATVHTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVIFYTPKEIGGLG
MLSMGHILIPQSDLRYSQQTDVGVTHFRSGMSHEEDQLIPNLYRYIQPWESEFIDSQRVW
AEYALKRQEAQAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRTDFKQYQ
VLKQNPFWWTHQRHDGKLWNLNNYRTDVIQALGGVEGILEHTLFKGTYFPTWEGLFWEKA
SGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMHGKI
PTLKISLIQIFRAHLWQKIHESVVMDLCQVLDQELDALEIETVQKETIHPRKSYKMNSSC
ADILLFAAHRWPMSKPSLVAESKDVFDQKASNKYWIDVQLRWGDYDSHDIERYTRAKFMD
YTTDNMSIYPSPTGVMIGLDLAYNLHSAFGNWFPGSKPLLAQAMNKIMKSNPALYVLRER
IRKGLQLYSSEPTEPYLSSQNYGEIFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGA
IFIFNPRTGQLFLKVIHTSVWAGQKRLGQLAKWKTAEEVAALVRSLPVEEQPKQIIVTRK
GMLDPLEVHLLDFPNIVIKGSELQLPFQACLKIEKFGDLILKATEPQMVLFNIYDDWLKS
ISSYTAFSRLILILRALHVNNEKAKMLLKPDKSVITEPHHIWPSLTDDQWMKVEVALRDL
ILSDYAKKNNVNTSALTVSEIRDIILGAEITPPSQQRQQIAEIEKQAKEASQLTAVTTKT
TNVHGDELIVTTTSPYEQAAFGSKTDWRVRAISATNLYLRVNHIYVNSEDIKETGYTYIM
PKNILKKFICIADLRTQIAGYLYGVSPPDNPQVKEIRCIAMPPQWGTHQQVHLPSGLPEH
DFLTDLEPLGWMHTQPNELPQLSPQDVTSHARVLENNKHWDGEKCIILTCSFTPGSCSLT
AYKLTPTGYEWGRANKDTGSNPHGYLPTHYEKVQMLLSDRFLGFYMIPDNGPWNYNFMGV
KHTVSMKYGVKLGTPREYYNEDHRPTHFLEFSNMEEGDTAEADREDTFT
NT seq
7170 nt
NT seq
+upstream
nt +downstream
nt
atgtggagtggaaacggacaagatatgtggaacaatagtaatatagcaccaccaggtact
agcggaggaccaccgccgccgccgtcaatgatgcagccacctcctccgccgtcgtctatg
atgcctccgccacctggtacgagttcaggacactctatgatgcctcctggtacaagtggt
ggaggagctagtggtgctggaccgcctttgccacctccatcttatactgttttgccgact
gaggctcagcttgaagagaaagctaggaaatggatgcagcttaactctaagcggtatagt
gataagcggaagtttggatttgtggagacgcaaaaggaggatatgcctccggaacatgtt
cggaagattattagggaccatggggatatgtcttcaaaaaaatatcgtcatgataaacgt
gtgtatctcggagctcttaaatttgtaccgcatgctgtttacaaactccttgagaacatg
cctatgccgtgggagcaggttcgagatgtaaaaatcctgtaccatattactggtgctatt
acatttgttaatgagattccatgggttgtcgaacctatatatctggctcagtggggcaca
atgtggatcatgatgagaagggagaagagagaccggcgacatttcaagaggatgcgtttt
cctccctttgacgatgaggagccaccgttagattatgctgataatcttttggatgttgat
cctttggagccaatccagttggagttggatgaagaagaggattctgcggtttataactgg
ttttatgaccataagccattggtgaaaacaaagcttattaatggtcctagttaccgcagg
tggcatttgtccctccctataatggcaacacttcaccgactggctggacagcttctttca
gacctgactgatcgcaattacttctacttgtttgatatggagtcctttttcactgctaaa
gcattgaacatgtgcatacctggtggtccaaagttcgaacctttatatcgtgacatggag
aaaggagacgaagactggaacgagttcaatgatatcaacaaattgatcatcaggtcacca
cttaggacagagtacagaattgccttccctcacctctacaacaacaggccaagaaaggtg
aggcttggcatatatcacactccgatgatcatgtacataaaaacagaggatcctgatcta
cctgctttttattatgatccgctgatacaccccatagtcaccaaggaccgcagagagaag
aaagtttctgacgatgacaatgatgatgattttgccttacctgagggtgtggaaccgttg
ctgactgagactccaatctatactgatactactgctgctggtatttccctattgtttgcc
ccacgcccatttaacatgagatctggtcgaacaagacgtgctgaagatattccccttgtt
tctgattggtttaaggagcactgtcctccatcatatcctgtcaaggttcgcgtcagttat
cagaagttgttgaaatgttttgtattgaacgagttgcatcacagaccccccaaggcccag
aagaagaagcacctctttcgctcacttcaagccacaaaatttttccaaaccacagagctt
gattgggctgaggctggtcttcaagtttgtaagcagggatataatatgctgaatctcttg
atccataggaagaacctgaattatcttcatcttgattacaattttaatttgaagcctgtt
aagacactaactacaaaggaacgtaagaaatcacggtttggaaatgctttccacctgtgt
cgtgaaattctgcgtttgacaaagcttgttgttgatgccaatgtccagtttcgtctggga
aatgttgatgcatttcagctggcagatggcttgcaatacattttttcgcatgttggtcag
ttgacgggtatgtatcgttacaagtacaggcttatgaggcagattcggatgtgcaaggat
ctgaaacatttgatctattatcgatttaataccgggccggttggaaaaggtcctggttgt
ggtttctgggcacctatgtggagggtgtggttattcttcctgcggggcatagtacctctt
ttggaacgttggttaggaaatctactggcaaggcaatttgagggtcgccattcaaagggg
gtggccaaaactgtaacaaagcaacgtgttgaaagccacttcgatttagagctccgtgct
gcagtgatgcatgatgtccttgatgctatgccagaggggatcaagcaaaataaagcaaga
accatcttacagcatctaagtgaagcatggcgttgttggaaggcaaatattccttggaag
gtccctggtttgcctgttcctattgagaacatgattctccgctatgtcaaatccaaagct
gattggtggacaaatgttgctcactacaatcgtgaacgtataagaagaggagcaactgtt
gacaagaccgtgtgccggaaaaaccttggaagattgactcgcctttggctgaaggctgaa
caggagcggcaacataactacttgaaagatggaccatatgttactccagaagaagcagta
gccatatatactaccactgtgcattggttggagtcgaggaagttttctcctataccattc
cctccgttgtcatacaagcatgacacaaagctacttatccttgcacttgagagactgaaa
gaatcttacagtgtggctgtgaggttaaaccaacagcaaagggaagagttgggtctcatt
gagcaagcttatgataatcctcatgaagcattatcacgaattaagcgtcatctacttact
cagcgtgccttcaaagaagttggaattgagtttatggacttgtacagctacctcattcca
gtttatgagattgagccacttgagaagattactgatgcatatctggatcagtacctatgg
tatgaaggtgataagcgtcatctcttcccaaattggattaagcctgccgactcagagcca
ccacctctgttggtgtacaaatggtgtcaaggcataaacaatttgcaaggagtatgggac
actagtgaaggacagtgtgtggtgatgctgcagaccaagtttgagaagttctttgaaaag
atcgacttgaccatgctgaacaggcttctgcgtttggtgctcgaccacaatattgctgat
tatgtcactgcaaaaaacaatgttgtactgtcttacaaagatatgagccatacaaattca
tacgggctgatacgcggtcttcagtttgcttcatttgttgtacagtactatgggcttgtt
ttggatcttttgctccttggtttaactcgagcaagtgaaattgcgggtccaccacagatg
cctaatgagttcataacctatagtgattctagagtggaaacaaggcatccaatccggttg
tactctcgatacattgacaaggtgcatatattatttcgcttcactcatgaagaggctcgg
gaccttatccaaagatatcttactgagcatcctgatcccaacaatgaaaatatggttggt
tataacaacaagaaatgctggccaagggacgcaagaatgaggctcatgaagcatgatgtt
aatcttgggagaagtgtcttctgggacatgaagaatcgactgcctagaagtatcactact
ttggaatgggaaaatagctttgtctctgtttatagcaaagataatccgaacttgctcttc
agcatgtgtgggtttgaagttcggatactgcctaagattagaatgacccaagaggcattc
agcaatacaagagatggagtctggaatttgcaaaacgagcagactaaggaacgcacggct
gttgccttcttgcgtgtagatgatgagcacatgaaggtgtttgagaatcgtgttaggcag
atccttatgtcctctggttctacaacattcacaaagatcgttaacaaatggaacactgct
cttattggcctcatgacatatttccgtgaagcaacagtgcatacacaagagttgctggac
ctgctggtcaaatgtgaaaacaagatacagactcgtattaagattggtttgaactcaaaa
atgcctagcaggtttcctcctgttattttctacacaccaaaggaaattggagggcttggg
atgttgtcaatgggtcacatattgatcccccagagtgatcttaggtatagtcagcaaaca
gatgttggtgtcacacatttcagaagtggaatgagccatgaagaagaccaattgatccca
aatctctaccggtacatacagccttgggaaagtgagtttatagactctcagagagtttgg
gccgagtatgctttgaaaaggcaggaagcccaggcacagaataggcgcttgactcttgaa
gatttggaagattcgtgggatcgtggaatacctcgaatcaatacattgttccagaaggat
cgccacacccttgcttatgacaagggatggagagtaagaacagattttaagcagtaccaa
gttcttaagcagaatccgttctggtggacacaccagaggcatgatggaaagctatggaac
ctgaataattatcgtactgatgttattcaagctcttggaggtgttgaaggaattcttgag
catacattattcaaaggaacatatttccctacttgggagggtcttttctgggagaaagct
tcaggttttgaggaatccatgaagtacaagaaactgactaatgctcaacgatctgggctt
aatcaaattccaaatcgtaggtttacactttggtggtcaccgaccataaatagggcaaat
gtctatgttggtttccaagtacagctggatctgactgggatatttatgcacgggaagatt
ccaactctgaagatatctttaatacagatattccgtgcacatttgtggcagaagatccat
gagagtgtcgtcatggatctctgccaagttttggatcaagagttggatgcattggaaatt
gaaactgtacagaaggaaacgattcatccaagaaagagttacaaaatgaatagctcgtgt
gctgacatcctcctctttgctgcgcatagatggccaatgtcaaaacctagtcttgtggct
gaatcaaaggatgtgtttgaccagaaagctagtaacaaatactggatagatgtgcagctt
cggtggggtgactacgattctcatgatattgagcgttatacacgagcaaagttcatggat
tacacaacagacaacatgtctatttatccatcgcctactggtgttatgattggactggac
cttgcttacaacttgcattccgcctttggaaactggtttcctggttcaaaaccattgctt
gcccaagccatgaacaagattatgaagtcaaatcctgcgctctatgtgctgagggaacgc
ataaggaaagggttgcaactgtattcttcagagcccacagaaccatatttatcatctcag
aactatggagagatattcagcaatcaaatcatctggtttgttgatgacacaaatgtgtac
cgtgtgaccatccacaagacctttgagggaaatctgacaacaaagccaataaatggtgca
attttcattttcaatcccaggacaggtcaactgtttttgaaggtcattcacacaagtgtg
tgggcagggcaaaagcgtcttggccaactggcaaagtggaaaacagctgaagaagtggct
gcgcttgttaggtctttgcctgttgaagaacaaccaaagcaaattattgtgactcggaag
ggaatgcttgatccattggaggtccacttgcttgattttccaaatattgttatcaaagga
agtgagctgcaattaccattccaggcttgtttgaagatagagaaatttggtgatctgata
ctgaaggctacagagccacaaatggttctgttcaacatatatgatgattggttgaagagt
atctcatcttatacagcattctccaggctcatcctcattctgcgtgcgctccatgtgaac
aatgagaaggctaagatgttactcaagcctgacaagtctgtcattactgagcctcaccac
atctggccttcacttacagatgaccagtggatgaaggttgaggtagcacttcgagatctc
attctctcagactatgcaaaaaagaacaatgtgaacacatcagcattgacagtgtctgag
atccgtgatattatacttggagctgagataactcctccatcacagcagcgccaacagata
gctgagattgagaaacaggctaaggaagcaagtcaactgactgctgttaccacaaagaca
actaatgtccatggtgatgagttgattgttactacaacaagtccctatgaacaagctgcc
tttggctctaaaacagattggcgtgtcagagcaatttctgctacaaatctctatctccgt
gtgaaccacatatatgtaaattcagaggacataaaggagactggatatacttacatcatg
ccaaaaaatattctgaagaagttcatctgcattgctgatctgcggacacaaattgctggt
tacttgtatggtgtaagtccaccagataatcctcaggtgaaagaaatccggtgtattgca
atgcctccacagtggggtacacatcagcaggtgcatctaccttctggtcttcctgagcat
gattttctcaccgacttggagccgttgggatggatgcatacacaaccaaatgagcttcct
cagttatcgccacaggatgtgacttcacatgctcgggtcctggagaacaacaaacactgg
gatggagagaagtgtattatattgacatgcagtttcacgccagggtcttgttcattaact
gcatataagttgacgccaactgggtatgaatggggacgtgctaacaaggatacaggaagt
aaccctcatggttacctgccaactcattacgagaaggtccagatgctgttgagtgaccga
ttccttggcttttacatgatacctgataatggaccttggaattacaacttcatgggagtg
aaacacactgttagcatgaaatatggagtgaagttaggtacacctcgtgagtactacaat
gaggatcacagaccaacgcatttcctggaattcagtaatatggaggaaggtgatactgct
gaggcagatcgagaggatacatttacataa
DBGET
integrated database retrieval system
