Solanum tuberosum (potato): 102587039
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Entry
102587039 CDS
T02981
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
sot
Solanum tuberosum (potato)
Pathway
sot03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sot00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102587039
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sot03019
]
102587039
03036 Chromosome and associated proteins [BR:
sot03036
]
102587039
Enzymes [BR:
sot01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
102587039
Messenger RNA biogenesis [BR:
sot03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
102587039
mRNA degradation factors
5'-3' decay
Decapping complex
102587039
Chromosome and associated proteins [BR:
sot03036
]
Eukaryotic type
Gene silencing
piRNA pathway
102587039
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Sirohm_synth_M
Motif
Other DBs
NCBI-GeneID:
102587039
NCBI-ProteinID:
XP_006345594
LinkDB
All DBs
Position
Un
AA seq
478 aa
AA seq
DB search
MNSRSGYPPPWMGGGGGSMHPNANTSFQQRNQQQYMQRSSVPHQQQFQNQQTQQWMRRSD
SAIDEVEKTVQSENGSSQDWKARLKIPPLDARYRTEDVTATKGNDFEDYFLKRELLMGIY
EKGFERPSPIQEESIPIVLTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVIILVP
TRELALQTSQVCKELGKHLKIQVMVSTGGTSLKDDIMRLYQPVHLLVGTPGRILDLARKG
VCVLKDCSMLVMDEADKLLSPEFLPSIEQLIRFLPASRQILMFSATFPVTVKAFKDRYLQ
KPYVINLMDELTLKGITQFYAFVEERQKLHCLNTLFSKLQINQSIIFCNSVNRVELLAKK
ITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPK
NSETYLHRVGRSGRFGHLGLAVNLITFEDRFNLYRIEQELGTEIKQIPPHIDQAVYCG
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
atgaattcgagatcaggatatccgccgccttggatgggcggcggcggcggcagtatgcat
cctaatgctaacactagttttcaacaaagaaatcaacagcaatatatgcagagaagttca
gtgccgcatcaacaacaatttcagaaccagcaaacacagcagtggatgagaaggtcagat
tctgctattgatgaggttgaaaagactgtgcaatccgaaaacggaagttcacaagattgg
aaggctaggttgaagataccaccacttgatgctcgatacaggacagaggatgtgacagca
accaagggaaacgattttgaagactattttctaaagcgtgaacttcttatgggaatttac
gaaaagggatttgagaggccatcaccaattcaggaggagagtattccaattgttctaaca
ggaagtgatattttggcaagggccaagaatggaactgggaagactgctgccttctgcatc
cctgcattagaaaaaattgatcaggacaacaatgtcattcaagttattatccttgtcccg
actcgggaattggctcttcaaacatctcaagtttgcaaagaacttgggaagcacttaaaa
attcaagtcatggtttccactggggggactagcttaaaagacgacataatgagactgtat
cagccagtgcatttgcttgttggaactcctggaagaatacttgaccttgcaaggaaagga
gtgtgtgttttgaaagattgctccatgcttgtcatggatgaggctgataagcttctatca
ccagagttcctaccttccattgagcagctgatccgcttcttgcctgcaagccggcagata
ttaatgttttccgctacatttcctgttacagtcaaggccttcaaagatagatacttgcag
aagccttatgttatcaaccttatggacgaacttacactcaagggtattacccagttttat
gcttttgttgaagaaagacagaaacttcattgccttaacactctgttctcgaagcttcaa
ataaaccaatcaataattttttgcaactctgtaaatcgtgtagaacttcttgccaagaag
atcacggaactgggttattcatgcttctatatccatgcgaagatgcttcaagatcatagg
aacagggtttttcatgacttccgcaatggtgcctgcaggaaccttgtctgtactgatttg
tttactagagggatagacattcaagcagtcaatgttgttatcaactttgatttcccaaag
aactcagaaacatatttacacagggttgggcggtctgggagatttggtcaccttggttta
gctgtcaatctaattactttcgaggatcgcttcaatttgtatagaattgaacaagagcta
ggaaccgagattaagcaaattccgccacatatagaccaggccgtgtattgcgggtaa
DBGET
integrated database retrieval system
