Solanum tuberosum (potato): 102587942
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Entry
102587942 CDS
T02981
Name
(RefSeq) protein HUA ENHANCER 2-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
sot
Solanum tuberosum (potato)
Pathway
sot03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sot00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102587942
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sot03019
]
102587942
03041 Spliceosome [BR:
sot03041
]
102587942
03009 Ribosome biogenesis [BR:
sot03009
]
102587942
03016 Transfer RNA biogenesis [BR:
sot03016
]
102587942
Enzymes [BR:
sot01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
102587942
Messenger RNA biogenesis [BR:
sot03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
102587942
Spliceosome [BR:
sot03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
102587942
Complex C
U4/U6.U5 tri-SnRNP related factors
102587942
Ribosome biogenesis [BR:
sot03009
]
Eukaryotic type
Pre-60S particles
Helicases
102587942
Transfer RNA biogenesis [BR:
sot03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
102587942
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ATPase_2
Motif
Other DBs
NCBI-GeneID:
102587942
NCBI-ProteinID:
XP_006353129
LinkDB
All DBs
Position
Un
AA seq
980 aa
AA seq
DB search
MMESPTLKRKLEEENEAESTSKRSRTWLHEVAIPSCYASSNDESLHGTLSNPVYNGKMAK
IYPFKLDPFQEISVACLERKESVLVSAHTSAGKTAVAEYAIAMSFRDKQRVIYTSPLKAL
SNQKYRELSEEFSDVGLLTGDVSISPNASCLVMTTEVLRTMLYVGSEVLKEVAWVIFDEI
HYMKHRERGVVWEESIIFLPPAIKMVFLSATMSNPMEFAEWICNIHKQPCHVVYTDFRPT
PLQHYAFPKGGSGLYLVVDDNDQFREDNFLKLRETFTKKKPGSSSAKASGRSGEGGNASG
VSDIYKIVKMIMARKFQPVIIFSFSRIDCEKHAMCMTKLDFNTEEEKEAVEQVFHSAVAC
LNEEDRNLPAIELMLPLLQRGIAVHHSGLLPVVKELVELLFQEGLIKALFATETFAMGLN
MPAKTVVFTSVKKWDGDAHRYIGSGEYIQMSGRAGRRGKDERGICIIMIDEKMEMDSLKD
MVSGNPDPLVSSFRLSYYSILNLLSRTEGQFTAEHVIKNSFHQFQYEKALPDIGKKVSKL
EEEGALFDASGEAEVAGYHKLRLEMAQFEKKLMAEITRPERVLYFLLPGRLVKVREGGKD
WGWGVVVNVVKKPPAALGSLPATLSASCAAGYIVDTLLHCSLGSSENGSRPKPCPPRPGE
KCEMHVVPVQLPLISSLSKLRISVPSDLRPLEARQSIFLAVQELEKRFPEGLPKLNPVKD
MGIEDPEVVNMVNQIEELEKKFFSYQLHKSQNELQLRSFQRKAEVNLEIQQLKSKMRDSR
LQKFRDELRNRSQVLKKLGHIDADGIVQLKGQAACLIETGDNLLATELMFNGTFNDLNHH
QVAALTSCFIPGDRSEEKIQLRDELEKPLQQLQDSARRIAEIQHECKLEIDVDKYVVASV
RPFLMDVIYCWSMGASFAEVIQMTDIFEGSITRLARRLDEFLNQLKAAAHAVGEVDLENK
FGAASDSIRRGIIFANSLYL
NT seq
2943 nt
NT seq
+upstream
nt +downstream
nt
atgatggagtctccgacattgaaacggaaattagaggaggagaatgaagcagaatctact
tcgaaaaggtcaagaacttggttgcacgaggtagcaattcccagttgttacgcttcaagc
aatgatgaatcacttcatggaaccctttcaaatcctgtttataatggtaaaatggcgaaa
atctatccatttaagcttgacccatttcaggaaatctcagtagcgtgtttggagcgaaag
gaatcagttcttgtatctgcacatacttctgctggtaaaactgcagttgcagagtatgca
attgctatgtcttttagggataagcaaagggtaatctatacttcacctttgaaagctttg
agtaatcagaaatacagggagttgagtgaggagttttctgatgtgggtttattgactgga
gatgtttcaatttcaccaaatgcgagttgtttggtgatgacgactgaagttctgagaact
atgctttatgtgggttctgaggtattgaaagaggttgcttgggttatatttgatgaaata
cattacatgaaacatcgagagagaggggttgtttgggaagagagtattatattcttgcca
ccagctattaagatggtttttctttcagcaacaatgtcaaatcctatggagtttgctgaa
tggatttgtaatattcataagcagccttgtcatgtggtttatactgattttcgacccacc
cctttgcagcattatgcgttccctaagggtggttctggattgtatctcgttgttgatgac
aatgaccaatttagggaagacaatttcttgaaattacgggaaactttcaccaagaagaag
ccagggagctccagcgcaaaggctagtggaagaagtggagaaggtggcaatgcttctggt
gtgtctgacatctacaaaattgtcaagatgatcatggcacggaagtttcagcctgtcatt
atattcagttttagtagaatagattgtgaaaaacatgcaatgtgtatgaccaaacttgat
tttaatactgaagaggaaaaagaagctgtggagcaggtattccatagtgcagtagcgtgc
ttgaacgaggaagataggaacttgccagcaattgaattaatgttgccactgcttcagcga
gggattgctgttcatcactctggtttgcttcctgttgtcaaagaacttgtggaacttctt
ttccaagaaggactaataaaggccctttttgccacggagacgtttgccatgggactaaac
atgcctgcaaaaacagtagtttttaccagtgtaaaaaaatgggatggtgatgctcatcgt
tacattggatctggtgagtatatacagatgagtggaagagcaggacgtcgtggcaaagat
gagcgtggtatttgcattatcatgattgatgagaagatggagatggatagcctcaaggac
atggtttcgggcaacccagatccgttggtcagctcctttaggttgagttactactcaatt
ttgaatctattgagccgcactgaaggtcaatttaccgccgagcatgttatcaaaaactca
tttcaccagtttcagtatgagaaggctttacctgacatcgggaagaaggtttccaagttg
gaagaagaaggtgcattgtttgatgcctcaggagaggctgaggttgcaggatatcataaa
ctaaggcttgagatggcccaatttgagaaaaaattgatggctgaaataacaaggcctgaa
agggttctgtattttcttcttcctggtaggctggttaaggtacgagaaggtggaaaagat
tggggttggggtgttgtagtcaatgtggtgaagaagcctccagcagcattgggttctttg
cctgctaccctctctgcttcatgtgctgctggctatattgtggatacgttacttcattgc
tctctgggttccagtgaaaatggttctcgaccaaaaccatgccctcctcgtcccggggaa
aagtgtgaaatgcatgtggttcctgttcagttacccttaatttcttctctcagcaagctt
agaatatctgttccttctgatcttcggcctttggaagcaaggcagagtatttttcttgca
gtacaggagcttgaaaaacggttccctgaaggcctcccaaagctcaaccctgtaaaggac
atgggcattgaagatcctgaagttgttaatatggtgaaccagattgaagaacttgagaag
aagttcttttcttatcaactgcataagtcacaaaatgaacttcagcttaggagtttccag
aggaaggctgaagtgaaccttgagattcaacagctcaagtcaaaaatgcgtgattcacgg
cttcaaaaatttcgggatgaacttaggaaccgctcccaagtcctcaaaaagctgggtcac
attgacgctgatggtattgtgcagttgaagggacaggcagcctgcttgatagaaactgga
gacaaccttctcgcaactgaattgatgtttaatggtacattcaatgatcttaatcatcat
caagttgcggctctgacaagctgctttatcccaggtgatagatcagaggaaaaaatacaa
ttaagagatgaacttgaaaaaccattgcaacagttacaagatagtgcaagaagaatagca
gagatacaacatgagtgcaagctggaaatagatgttgataaatatgtggtggcatcagtt
cgaccattcttaatggatgttatttactgttggtcaatgggtgcatcttttgcggaggtt
atacaaatgacagacatctttgaaggtagcatcacacggctggctagaaggcttgatgaa
tttttaaaccagctgaaagctgctgcacatgctgtgggagaagtagatttagagaacaaa
tttggtgcagcaagtgacagtattcggcgagggataatatttgcaaattctctctacctg
tga
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