Solanum tuberosum (potato): 102588653
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Entry
102588653 CDS
T02981
Name
(RefSeq) pre-mRNA-processing protein 40A-like
KO
K12821
pre-mRNA-processing factor 40
Organism
sot
Solanum tuberosum (potato)
Pathway
sot03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sot00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102588653
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sot03041
]
102588653
Spliceosome [BR:
sot03041
]
Complex A
U1 snRNP components
U1 related factors
102588653
Complex B
102588653
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
TetR_C_11
Motif
Other DBs
NCBI-GeneID:
102588653
NCBI-ProteinID:
XP_006343433
LinkDB
All DBs
Position
Un
AA seq
1031 aa
AA seq
DB search
MASNPPPSGPQPLWPPSVGSTPPQGFGSFPMQFRPALSTQQGQHFAPPISASPQYRPVGQ
TPNAGMPPGQGQIPQFSQTMQQFPPRPGQSGHGTPSSQAIQMSYIQSSIPQPQQVNPPLN
SHMPGVSGAGNPFSSSYTVQSSSQMHGPTFPAGGQTWLSSGSQTTPVAAPTPPSSHQLSA
VAPAVPASTASQQTASDWQEYEAADGRRYYYNKNTKQSSWEKPLELMTPLERADASTVWK
EFTTADGRKYYYNKETKQSKWTIPDELKLARELAENAAGQVVQTGTSTNSGVQVSEAVTP
AEQPSAVTPVSSTPSSTVSGVASSPVPVTPAVSDVNTPPLVVSGSSAIPSVSLAVTSSAG
VSSPAVSGSTESAALANAYQTQMSGIENLSPQVASSLSGASSQDIEEAKKGMAVAGKINV
VPAEEKSADEEPFLYATKQEAKNAFKALLESANVESDWTWEQTMRVIINDKRYGALKTLG
ERKQAFNEYLMQRKKQEAEERRLRQRKAKEEFTKMLEESKELTSSTRWSKAVTMFEDDER
FKAVEREADREDLFRNYLVDLQKKERSKAQEEYRRNRLEYKQFLETCGFIKVDTQWRKVQ
DLLEDDERCSRLEKLDRLEIFQEYIRDLEKEDEEQRKLQKEQLRRAERKNRDAFRKMIEE
HIAAGMLTAKTSWRDYCQMVKEFVAYQAVASNTSGSTPKDLFEDVTEELEKQYHEDKIRV
KDVVKSEKITISSTWTFEDFKVAIFEGIGSPSIHDVNLQLIFEDLVERAKEKEEKEAKKH
QRLAKDFTDKLSSIKEITDSSSWEESKELVEDSSEFRAIGEETISRAVFEEYVAWLQEKA
KEKERKREEEKVKKEKEKDEKEKRKDKERREKEKEKEKEREKEKERGKERSKKDEPDSMT
MDVTDIYEHKEERKREKDKERKHRKRHHSSNDELTSEKDEKEESERDKERKHRKHHQSSN
DEVTSDRDEKEEFRKSHRHSSDRKKSKKHAHSPESDGESRHKRHRRDRDGSRRNGGHEEL
EDGELGEDGES
NT seq
3096 nt
NT seq
+upstream
nt +downstream
nt
atggccagtaatcctccaccatctggtccacagcctctttggcctccttcagttggatcc
acaccacctcaaggttttggttcatttcctatgcaatttcgacctgctctatcaacacag
caaggccagcactttgctccaccaatttcagcctctccacaatatcgccctgttggacaa
acaccaaatgctggaatgcctcctggtcaaggtcaaataccccagttttctcaaacaatg
cagcagtttcccccaagacctggccagtccggtcatggaacaccgtcatctcaggcaatt
cagatgtcatatatccaatcaagtattccacagcctcaacaagtcaatccccctttgaat
agtcacatgcctggtgttagtggtgctggaaatccattctcatcatcatatacagttcaa
tcttcatcccaaatgcatggtcctactttccctgccgggggacagacttggttgtcatct
ggaagtcaaaccacaccagtggctgccccgactcccccgagtagtcaccaattgtcagct
gtagctccagcagttccggcgagcacagcttcacagcagactgcatctgactggcaagag
tatgaagctgctgatgggagacgatattattacaataagaatacaaagcaatctagctgg
gagaagcctttggagctgatgacacctttagagagagctgatgcttcgactgtatggaaa
gaattcacaactgccgatggtcggaagtattactacaacaaagaaacaaagcagtctaag
tggacaattcctgatgaactaaagttggctcgtgaactcgctgaaaatgctgctggtcaa
gtagttcagactggaacaagcacaaattctggtgtgcaagtcagtgaagctgtgacccca
gcagaacaaccatctgctgtcaccccggttagctccaccccttcttcaacggtttctgga
gttgcttcaagccctgttccagttacgcctgctgtttctgatgttaatactccacctctg
gtggtttctggatcatcagccattccttctgtgagccttgctgtgacaagttcagctggt
gtctcttcacctgctgtttcagggagtacagaatctgctgctctagctaatgcctatcag
acacaaatgagtggcattgaaaatttatctcctcaagttgctagttctttaagtggagct
tctagtcaggatattgaggaggcaaagaaaggcatggcagttgctgggaagattaatgtg
gtacctgcagaagagaaatcagcagatgaagaaccttttctatatgccaccaagcaggag
gctaaaaatgcattcaaagctctactagagtctgctaatgttgaatctgattggacatgg
gagcagacaatgcgagttataatcaatgataaacgatacggggctctgaaaactcttggt
gagcggaaacaagcatttaatgagtacttgatgcaaaggaagaaacaggaggctgaggag
aggcgccttagacaaagaaaggcaaaagaggaattcacaaagatgttagaggagtccaag
gaactcacttcatctacaagatggagtaaggcagttacaatgtttgaggatgatgaacgg
ttcaaggctgttgaacgagaggctgatcgtgaagatctcttcaggaactacttggtggat
cttcagaaaaaggagaggtcaaaggctcaagaagagtatcgacggaatagattggagtac
aaacagtttttggagacttgtggctttatcaaggtagatacacagtggcgcaaagtccaa
gatcttttggaagatgatgaaagatgttcacgccttgaaaaacttgaccgcttagagatt
ttccaggaatacatccgtgacctggagaaggaggacgaagaacagagaaaattgcaaaag
gagcaactgaggcgtgcagagcgcaagaaccgggatgcattccgaaagatgatagaggag
catattgctgcaggcatgcttactgcaaaaacatcttggcgcgattattgtcagatggtt
aaggagtttgtggcttatcaggctgttgcatcaaatacttctggttcaacaccaaaagat
ttgtttgaagacgtcactgaagagttggaaaaacagtatcatgaagacaagattcgtgta
aaagatgtagttaagtcagaaaagatcacgatctcatcaacatggacatttgaagacttt
aaagttgcaatttttgagggaattggttccccatccattcacgatgttaatctacagctt
atttttgaggatctagttgagagagcaaaggaaaaggaagagaaagaagctaaaaagcat
caaaggcttgcaaaagattttaccgacaagctcagttccatcaaggaaataactgattcc
tctagttgggaggagagcaaagaacttgtggaggacagttcagagttcagagctattggt
gaagagacaatctcaagggcagtctttgaggaatatgttgcatggttgcaggaaaaagca
aaggaaaaggaacgcaaacgagaggaggaaaaggtcaaaaaagagaaagaaaaagatgag
aaagagaagagaaaggataaggagagaagggagaaagaaaaagagaaggaaaaagagcgt
gagaaggagaaagaaaggggaaaagaacgatcaaaaaaagatgagccagatagcatgact
atggatgtaacagacatctatgagcacaaagaagagagaaagagagaaaaagacaaagaa
aggaaacatcggaagcgacaccatagctctaacgacgagctgacttctgaaaaggatgag
aaagaggaatctgaaagagacaaagaaaggaagcaccggaagcatcaccagagctctaac
gatgaggtgacatccgacagggacgagaaagaggaatttagaaagtcccaccgacatagc
agtgatcgtaaaaagtcaaagaagcatgcacattcacctgaatctgatggtgaaagtcgg
cataaaagacacagaagagatagggatggatcacgtcgaaatggtgggcatgaagagcta
gaagatggtgagcttggtgaagatggagaaagttga
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