Solanum tuberosum (potato): 102589835
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Entry
102589835 CDS
T02981
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 56
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
sot
Solanum tuberosum (potato)
Pathway
sot03013
Nucleocytoplasmic transport
sot03015
mRNA surveillance pathway
sot03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sot00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102589835
09122 Translation
03013 Nucleocytoplasmic transport
102589835
03015 mRNA surveillance pathway
102589835
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sot03019
]
102589835
03041 Spliceosome [BR:
sot03041
]
102589835
Enzymes [BR:
sot01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
102589835
Messenger RNA biogenesis [BR:
sot03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
102589835
Spliceosome [BR:
sot03041
]
Complex C
Other components
EJC/TREX
102589835
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
102589835
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
102589835
NCBI-ProteinID:
XP_006361727
UniProt:
M1BV48
LinkDB
All DBs
Position
Un
AA seq
427 aa
AA seq
DB search
MGENKENDAYEEELLDYEEDDEKIPDSATKVNGESAKKGYVGIHSSGFRDFLLKPELLRA
IVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAALVL
CHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKLHKELLKNECPHIVVGTPGRILAL
ARDKDLSLRNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVC
KKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSETEKNRKLNDLLDALDFNQVVIFVKSVSR
AAELNKLLMECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNIV
INYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSEVLNQVQERFEVDIKELPEQID
TSTYMPS
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgggagaaaacaaggagaacgatgcttatgaggaggagcttctcgactatgaagaagat
gacgaaaaaattcctgattccgccacaaaagtcaacggcgaatcggccaaaaagggttat
gttggaattcacagttcaggtttcagagactttcttctaaagccagagttgctgcgtgct
attgttgattctgggtttgagcatccgtccgaagtgcaacatgagtgcattccacaagct
attctgggaatggatgtcatttgccaagctaaatctggaatgggaaaaaccgctgttttt
gtcctttcaactctgcaacagattgaaccggttgctggtcaggttgctgccctggttcta
tgtcacacaagggaattagcttatcagatctgtcatgagtttgagaggttcagcacttat
ctgcctgatatcaaggttgctgttttctatggtggtgtcaacatcaagctccacaaagag
ctgctaaagaatgaatgccctcatattgttgttggaactcctggaagaatacttgcattg
gcaagagataaggacctgtctttgaggaatgtgaggcattttatactagatgaatgtgac
aagatgcttgaatcgcttgacatgaggagagacgtgcaggaaatcttcaagatgactcct
catgacaagcaagtcatgatgttttctgcaactctcagcaaggagattcgcccggtttgc
aagaaattcatgcaagatccaatggaaatttatgttgacgatgaggccaagttgactctg
catggacttgtacagcactacatcaaattgagtgagacggagaaaaaccggaagctgaat
gacctattggatgctttggacttcaaccaagttgtaatttttgtcaagagtgtcagcaga
gcagcagagttgaacaagttacttatggagtgtaattttccatctatctgcatccactct
ggcatgagccaagaagaaagactgacacgctacaagggtttcaaggaagggcacaagaga
attcttgtggcaactgatttggttggtagaggcatagacattgaaagggtgaacattgtt
attaactatgacatgccagattctgcagatacttatcttcacagagtgggaagagctggt
agattcggaactaaagggcttgcaataacttttgtgtcatctgcatcagattctgaagtt
cttaatcaggttcaggagaggtttgaagtggatattaaagaacttcctgagcagattgat
acttctacatacatgccatcttaa
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integrated database retrieval system
