Solanum tuberosum (potato): 102590960
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Entry
102590960 CDS
T02981
Name
(RefSeq) DNA excision repair protein ERCC-8
KO
K10570
DNA excision repair protein ERCC-8
Organism
sot
Solanum tuberosum (potato)
Pathway
sot03420
Nucleotide excision repair
sot04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
sot00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
102590960
09124 Replication and repair
03420 Nucleotide excision repair
102590960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sot04121
]
102590960
03400 DNA repair and recombination proteins [BR:
sot03400
]
102590960
Ubiquitin system [BR:
sot04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
102590960
DNA repair and recombination proteins [BR:
sot03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Cul4-CSA complex
102590960
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML_2
WDR55
Beta-prop_RIG_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EIPR1
Beta-prop_TEP1_C
NBCH_WD40
WD40_MABP1-WDR62_2nd
Beta-prop_EML
ANAPC4_WD40
WDR90_beta-prop_4th
Beta-prop_SPT8
Beta-prop_WDR75_1st
Beta-prop_IFT122_1st
WD_LRWD1
Beta-prop_Nup120_160
WD40_MABP1-WDR62_1st
Beta-prop_IFT140_1st
Beta-prop_SCAP
WD40_RFWD3
Beta-prop_WDR75_2nd
Beta-prop_WDR11_2nd
Beta-prop_LRRK2
Beta-prop_RIG_1st
NARG2_C
Motif
Other DBs
NCBI-GeneID:
102590960
NCBI-ProteinID:
XP_006342666
UniProt:
M1ATT5
LinkDB
All DBs
Position
Un
AA seq
453 aa
AA seq
DB search
MWKEIGDREFGKLRPNLFSNRIKSARIASIQLSNYKDIISPHRGSVNSLQVDLTEGRYLL
SSASDASVAVYDVQRATDYDESGLIAKHKHILLVDKQHEQGHKYAISTANWYPIDTGLFI
TGSYDHYVNVWDTNTTQVVVNFKMPGKVYKTAMSPVATSHMLIAAGTEDVQVRLCDISSG
AFAHTLSGHRDGVMSVEWSASSEWVLVTGGCDGAIRFWDIRRAGCFRVLDQSHTQLGRRP
SLLTRSTANKGSTLKPSSGGPNSSAKGRPSQKKMGNGVSIKHSAIARQVRGSGKQRLHPG
MLSSQDRATAHYGAVNGLKMTNDGMYLLSAGSDSRLRLWDIESGCNTLVNFETSRLQATK
ATQLAISHDSTLVFVPCMSTTKAFDLWSGKTMMDLRGHYENVNCCLYNSLDQELFTGGND
RKILVWSPSRTTTEELEGREGQSFAIDQDNWSD
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atgtggaaggagatcggagacagagaatttggcaagcttcgccctaatttattcagcaat
cgtattaagtcggctagaatcgcttctattcaactctccaactacaaagatatcatttct
cctcaccgtggctccgtcaactcccttcaggttgatttgacagagggacgatatctgtta
tcctctgcttcggatgcatcagttgctgtttatgatgtccaacgtgcaactgattacgat
gaaagtggtctgattgcaaagcataaacacatacttttggttgacaagcaacatgagcag
ggccacaaatatgccatttccacagccaactggtatccgattgacacgggactttttatt
acaggctcttatgatcattacgttaatgtctgggatactaacacaacacaggtggtagtt
aatttcaaaatgcctggaaaagtgtacaagactgccatgtctccggtggcaacatcacac
atgttaattgctgctggaactgaagatgttcaagttcgtctttgtgatatttcttcgggt
gcatttgcgcacacattatctggccatcgtgatggagtaatgtcggttgaatggtctgct
tctagtgagtgggttttggtaacagggggatgcgatggcgccattcgcttttgggacatc
aggcgtgcaggatgttttcgtgttttggatcagtctcatactcagcttggaagacgccca
tctcttcttacacgatccactgcaaacaagggttccacattgaaaccatcttccggaggc
ccaaattcatctgcaaaaggccgtccatctcagaaaaaaatgggaaatggtgtgagtatc
aaacactctgcaattgctagacaagtgagggggtctgggaagcagcgactgcatccaggg
atgctctctagtcaagatagagccactgcgcattatggtgctgtcaatggattaaaaatg
accaatgatggaatgtatctccttagtgcaggttctgattcaaggttaaggttatgggat
attgaatctggttgcaatacactagtgaactttgaaacatcacgactccaggccacaaaa
gctacacagttagccatatctcatgattcaacacttgtatttgtgccatgcatgtcaact
actaaggcatttgatttgtggtcgggcaaaacgatgatggatttacgtggccactatgaa
aatgtgaactgttgtctgtacaattcactggaccaggaactattcacgggtggtaatgac
cggaaaattcttgtgtggtctccaagtagaaccactaccgaggaattggaagggagggaa
ggacaatcttttgcgatcgaccaagataattggagtgattga
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