Solanum tuberosum (potato): 102591572
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Entry
102591572 CDS
T02981
Name
(RefSeq) 30-kDa cleavage and polyadenylation specificity factor 30-like
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
sot
Solanum tuberosum (potato)
Pathway
sot03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sot00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
102591572
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sot03021
]
102591572
03019 Messenger RNA biogenesis [BR:
sot03019
]
102591572
Transcription machinery [BR:
sot03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
102591572
Messenger RNA biogenesis [BR:
sot03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
102591572
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
zf-CCCH
zf-CCCH_2
Torus
zf-CCCH_12
zf-CCCH_3
Motif
Other DBs
NCBI-GeneID:
102591572
NCBI-ProteinID:
XP_006352991
LinkDB
All DBs
Position
Un
AA seq
677 aa
AA seq
DB search
MDDGEGGLNFDFEGGLDTGPTHPTASVPVLQSAGHITTGPAPNASVALVPPGGGVGQGGD
GSFVGNRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPVCRFFRLYGECREQDCVYK
HTNEDIKECNMYKLGFCPNGPDCRYRHAKLPGPPPPVVEVLQRIQNLTSYGYSNRFFQNR
NTNYSTQADKSQIPQVPNVMNQAVKSTAAEPPIGQPHQPHQQQVQQPQHQGAPTQTQTLP
SSQQNQAAIPLPQGPSRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDSVENVIL
VFSINRTRHFQGLAKMTSRIGGAAKGGNWKHEHGTAHYGRNFSLKWLKLCELSFQKTRHL
RNPYNENLPVKISRDCQELEISVGEQLASLLYVEPDSELMAVSLAAESKREEERAKGVNP
DNGNENPDIVPFEDNEEEEEEESEEEEEDEGFGQAFGPAALGRGRGRGIVWPPLVPFGRG
ARPFPGMRGFPPGMMSDGFSYGSMTPDGFPMPDPYGMGGRPFGPFGPRFPGDMMFHSRPP
AAGGFGMMMGPGRPPFMGGMGPGAPGPPRGGRPMGIHPSFIPPTPPPSQNPRVKKDQRAP
FNERNDRFSSGPDQGRGQEIAGSVGGPAEGVHYPQTENSFRNDESESEDEAPRRSRHGDG
KKKKNSMDGDATTGTEK
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atggatgatggagaaggaggattaaactttgattttgaaggtggcttagatacagggcca
acacacccaactgcatctgtaccagtattacaatctgcaggccacatcaccaccggtccc
gccccaaatgcttctgttgccttagttcctccaggcggcggtgtgggacaaggaggggat
ggttcatttgttggtaatcgtagaagtttcaggcagactgtttgcaggcattggctacgg
tcgttgtgtatgaagggtgatgcttgtggtttccttcaccagtatgataagtcccggatg
cccgtttgcaggttctttagactctatggagagtgtcgtgaacaagattgtgtttataag
cacaccaatgaggatattaaagaatgtaacatgtataaattaggattttgtccgaatggt
cctgattgccgatatagacatgcaaagctgcctggacctccacctccagtggtagaagtt
cttcagagaattcagaatttgacatcctatggttactcaaacaggttttttcaaaatcgg
aatacaaattattcaactcaggcagacaaatctcaaattccgcaagtacctaatgtaatg
aatcaagcagtgaaatctacagcagcagagccacccattggccaaccgcaccagccgcat
caacaacaagttcaacagcctcaacatcagggtgccccaactcaaacacaaacccttccc
agcagccagcaaaatcaggctgcaatacccctgcctcaaggaccatctaggtactttata
gttaaaagctgcaaccgtgagaatcttgaattgtcagtacaacaaggagtttgggcaact
caacgaagcaatgaggctaaactaaatgaagctttcgactctgtggaaaatgtcattcta
gttttttcaatcaatcggactaggcattttcagggtcttgcaaaaatgacatctagaatt
ggtggtgctgctaaaggaggaaattggaagcatgaacatggaactgcacattatggacgg
aatttttcattgaaatggttaaagctctgtgaactgtccttccagaaaactcgtcatttg
aggaatccatacaatgagaacttacctgtgaagataagcagagattgtcaagaattagag
atctctgttggtgagcagttggcttctttgctctatgtggaaccagacagtgaacttatg
gcagtctcactagctgcagaatccaagcgagaggaggaaagagcaaagggagtaaaccct
gataatgggaatgagaacccagatattgtaccttttgaagacaatgaagaagaggaagaa
gaagaaagtgaagaggaggaggaggatgagggctttggccaagcttttggaccagctgct
ttgggcagaggaaggggtaggggaatcgtatggcctcctctagttccttttggacgtgga
gccagacctttccctgggatgcggggcttccctccaggcatgatgagtgatggattttct
tatggatcaatgacacctgatggttttcctatgcctgatccttatggaatgggtggccga
ccttttggaccatttggccctcgattccctggtgatatgatgtttcacagccgtcctcca
gctgctggtggatttggaatgatgatgggtccaggaaggccccctttcatgggtggaatg
ggtcctggagcacctggcccacccagaggtggtcgaccaatgggaatacatccatcattt
attccacccacaccaccgccctctcaaaatcctcgggtcaaaaaggatcagagagctcct
tttaatgaaaggaacgatagattcagttcaggtccagaccaaggtaggggtcaagagatt
gcaggctcagttggtggaccagctgaaggagtacattatccacaaactgaaaacagcttt
agaaatgatgaaagcgagagcgaggatgaagcacctagaaggtccagacatggtgatgga
aagaaaaagaagaatagcatggatggagatgcaacaactggcacagaaaagtaa
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