Solanum tuberosum (potato): 102592008
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Entry
102592008 CDS
T02981
Name
(RefSeq) ATP-dependent RNA helicase DHX36
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
sot
Solanum tuberosum (potato)
Pathway
sot03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sot00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102592008
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sot03019
]
102592008
03012 Translation factors [BR:
sot03012
]
102592008
Enzymes [BR:
sot01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
102592008
Messenger RNA biogenesis [BR:
sot03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
102592008
Translation factors [BR:
sot03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
102592008
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
dsrm
AAA_22
nSTAND3
ATPase
AAA_16
AAA_19
T2SSE
AAA_23
PhoH
ABC_tran
Myosin_head
Motif
Other DBs
NCBI-GeneID:
102592008
NCBI-ProteinID:
XP_006348421
UniProt:
M1BXC5
LinkDB
All DBs
Position
Un
AA seq
1164 aa
AA seq
DB search
MHSRIGFLLACTKRRSSSSTLLLSTLFSSHQNRKIFAACHRRILIGSDVSKAYFFEESNL
RGLGQLRGFCRYPGIAALEQFSDDEYECDYESHPASSSVANVDEWKWKLSLLLRNEKDQE
IVSRDKRDRRDHEQISNLAKRMGLYSEIYGKVVVVSKVPLPNYRPDLDDKRPQREVVIPL
SLQRRVEGLLQEHIDRTQLSSGKDENILDVTKSSDIVTDANMDENPDSFLDGSVMEKVLQ
RRSLRMRNMQRGWQESPDGNKVLEFRKSLPAFKEKERLLQAIARNQVVVISGETGCGKTT
QLPQYILESEIESGRGAFCSIICTQPRRISALAVAERVATERGEPLGDSVGYKVRLEGVK
GKNTHLLFCTSGILLRRLLSDRNLDGITHVFVDEIHERGMNEDFLLIVLKDLLPRRPDLR
LILMSATLNAELFSSYFGGAPMIHIPGFTYPVRENFLEDVLEITGYKLTSFNQIDDYGQE
KMWKTQKQLAPRKKKNQITALVEDAVEKSNFENYSPRARDSLACWAPDCIGFNLIEAVLC
HICRKERPGAVLVFMTGWEDISCLRDKLKAHPLLGDPNRVLVLTCHGSMATSEQKLIFEK
PPQNVRKIVLATNMAEASITINDVVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQR
RGRAGRVQPGECYHLYPRCVYEAFAEYQLPELLRTPLNSLCLQIKSLQVGSIAEFLSSAL
QPPESLAVQNAIQFLKMIGALDENENLTHLGKFLAILPVDPKLGKMLIMGTIFRCFDPVL
TIVAGLSVRDPFLLPQDKKDLAGTAKSRFSAKDYSDHMALVRAYEGWKDAEREGSAYEYC
WRNFLSAQTLQAIHSLRKQFIFILKDAGLLDADTAINNKLSYNQSLVRAVICSGLYPGIS
SVVNRETSMSFKTMDDGQVFLYANSVNARYQTIPYPWLVFGEKVKVNTVFIRDSTGVSDS
IVILFGSALDCGDMAGHLKMLGGYIEFFMDPTLADCYIKLKEELDILLQKKLQDPEVDIH
KEGKYLMLAVQELVSGDQSEGRFVFGRENKKPKDSDTDRFTRDGTNPKSLLQTLLMRASH
SPPKYKTKHLKTNEFRALAEFKGMQFVGKPKRNKALAEKDAAIEALAWLTQTSEKNHDED
DKSPPDVTDNMLKLLGKRRRSKRR
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atgcattcgagaatagggtttctcttagcatgcacaaaaaggaggtcttcttcatctacg
cttcttctatctactctgttctcttctcatcaaaatcggaagatattcgctgcttgtcac
cgccggattttgatcggtagtgatgtaagtaaggcttatttcttcgaagaatcgaatctt
cgtggattgggacagctgcgtgggttttgtagataccctggtatagcagctttagagcaa
ttctccgacgatgaatatgaatgcgactacgaaagtcatccggcttcgtcatcagtggcc
aatgtagatgagtggaaatggaaacttagcctgctgttgcgcaatgagaaggatcaggaa
attgtatccagagataaacgggatagaagagaccatgaacagatatccaaccttgctaaa
aggatgggtctctatagtgaaatttatgggaaagttgtagtggtgagcaaggttcctctt
ccaaattacagacctgatcttgatgataagcggcctcaaagagaggtagtaatcccacta
agtctgcaaaggagagtagaaggtttgcttcaggaacatattgatagaacacaactcagt
agtggaaaagatgaaaacattttagatgttactaagtcctctgatatagttacagatgct
aatatggatgaaaatccagactcattcttagatggctctgtcatggagaaggttcttcag
aggcggagcttacgcatgcgtaatatgcagaggggttggcaggaatctcctgatggcaac
aaagtgctagaattccggaaatctcttcctgcatttaaggaaaaagaaaggctgctccaa
gcaattgcacgtaatcaggtggtagtaatttctggcgagacaggatgtggtaagaccact
caactgccgcagtacattctagagtcagagatagaatctggccgtggagcattttgtagc
ataatttgtacgcaacctcgaagaatatctgctttggctgttgcagaaagagtggctaca
gaaaggggagaacctcttggtgactcagttggttataaagtacgattagaaggggtgaaa
ggaaaaaatacacatttgctattttgtacgagtggtattttgcttcgtcgtcttctcagt
gaccgcaatcttgatggtataacccatgtttttgttgatgaaattcatgagcgtggcatg
aatgaagatttcctgttgatcgtgttgaaggatcttcttccacgacgcccagatttgaga
ttgattttgatgagtgctactcttaatgctgaattattttccagttactttggaggagcg
cctatgattcacatcccaggcttcacatatcctgtaagagaaaattttctggaagatgtg
ctggaaattacgggatataagttgacttcattcaaccaaattgatgattatggccaggag
aagatgtggaaaacacaaaaacagttagcaccccgcaaaaagaaaaatcagataactgct
cttgttgaggatgctgtagaaaaatcaaacttcgagaattatagtccaagggcacgtgat
tcactagcatgctgggctcctgattgtattggattcaatcttattgaggcagttttgtgc
catatatgtcggaaagaacgtccaggcgctgtactagtatttatgactggttgggaagat
attagttgtttaagagataaacttaaagcacatcctctcttgggtgacccaaatagagtg
ttggtgctcacttgtcatggttctatggctacctctgagcagaaactcatatttgaaaag
ccacctcagaatgtacgtaaaatagtacttgcaacaaatatggccgaggcaagtattact
ataaatgatgtggtctttgtggtggactgtggaaaagcgaaggagacgacttatgatgct
ctaaataatactccgtgcttattaccttcatggatttcacaagcttctgcacgacaaaga
aggggtagggctggccgtgtccaaccaggcgagtgctaccacttgtatccacgatgtgtg
tatgaagcttttgctgaataccaactacctgaactcctgagaactcctttgaattctctt
tgcttgcaaataaagagtttgcaggttggaagtattgctgaattcctttcgtctgcgctt
cagcctccagaatcattggctgtgcaaaatgctattcagtttttgaagatgattggtgca
ttagatgaaaatgagaatcttacacatctaggcaaatttttagcaattctccctgtggat
cccaagcttgggaaaatgctcattatgggtactattttccgttgctttgatcctgttttg
actattgtggctggtcttagtgtacgggatccatttctgttgcctcaagataaaaaagat
ttagcggggacagcaaagtccagattctcagccaaggactatagtgaccatatggcactt
gtccgtgcatatgaaggatggaaagatgctgaaagggaaggttctgcctacgaatattgc
tggaggaatttcctctctgcccagactcttcaagctatccattctcttagaaagcaattt
atcttcatcttgaaagatgctgggttgcttgatgctgatactgcaattaacaataagcta
agttacaatcagtctttggttcgtgctgtcatatgttctggattgtatcctggaatttca
tcagtggtgaacagagagacatcaatgtccttcaagactatggatgatggacaagtcttt
ctttatgcaaattcagtcaatgctcgctatcaaacgattccatacccttggctggtgttc
ggtgaaaaagttaaggtcaatacagtcttcatacgggattctactggagtatctgattcg
attgtgatcctatttggtagtgctctagactgtggagatatggctgggcatttaaagatg
ttgggtggatacatagagttcttcatggatcctactctggcggattgctacataaagctc
aaagaggagctcgatatacttttgcaaaagaagcttcaagatcctgaggtagacatccac
aaggaaggcaaataccttatgcttgctgttcaggaactggtttcaggagatcagtctgag
ggcaggtttgtgtttggtcgtgaaaacaagaagcctaaagattctgacactgatagattt
acaagggacgggacaaacccaaagagtttgttgcaaaccctacttatgagggccagtcac
tcccctcccaagtacaaaacaaagcatctaaaaacaaatgaatttagggcacttgcagag
ttcaagggaatgcaatttgtaggtaaaccaaagagaaacaaagcccttgcagaaaaggat
gctgcaatagaggcactagcatggttaactcaaacatctgaaaagaatcatgatgaagat
gataaatctcctcctgatgtcaccgataacatgctgaaacttcttggtaaacgcaggaga
tcaaagcgtcgctga
DBGET
integrated database retrieval system
