Solanum tuberosum (potato): 102592859
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Entry
102592859 CDS
T02981
Name
(RefSeq) tetratricopeptide repeat protein SKI3
KO
K12600
superkiller protein 3
Organism
sot
Solanum tuberosum (potato)
Pathway
sot03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sot00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102592859
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sot03019
]
102592859
Messenger RNA biogenesis [BR:
sot03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
102592859
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_11
TPR_16
TPR_17
TPR_14
TPR_8
TPR_12
TPR_CcmH_CycH
TPR_7
TPR_19
TPR_9
ARM_TT21_C
TPR_15
TPR_6
BTAD
TPR_10
TPR_NPHP3
Y2_Tnp
Motif
Other DBs
NCBI-GeneID:
102592859
NCBI-ProteinID:
XP_006342207
LinkDB
All DBs
Position
Un
AA seq
1179 aa
AA seq
DB search
MSVEDDAAIIRLEEAIVSQPGDPSLHFDLGVLLWGKGGELPDIQEKAAQHFLIAAKLNPQ
NAAAFTYLGHYYARVAVDSQRAIKCYQRALGLNPDDSIAGEAICDILDATGKETLEIAVC
REASHKSPRAFWALCRLGYLLVNQNKWSEAVQSLQQAIRGYPTCADLWEALGLSYQQMGM
FTAAVKSYGRAIELEESRVFALVESGNVYLMLGSFRKGIEQFRQALQISPLNLSAHHGLA
SALLSLAKESIDSGAFKWGASLLEEASKVALASTSIVGNISCSWKLLGDIQLTYTKCFPW
MDEGLGSGADENSFSSSILSWKRICCLAVRSACRSYQRALHLSPWQANVYTDVAIASELL
FSLKENCKDDMNPWFVSEKMCLGGLLLEGCNSEFWVALGCLSDHSALKQHAFIRALQLDV
SLAVAWAYLGKLYRQEGESQLAQLAFDRARSIDPSLSLPWSGMSADAAARNLKPDEAYEC
CLRAVQIFPLAEFQTGLVKLALQSGYLRSPEAFGAIQQALQRAPQYPESHNLKGLVCEAR
SDYESAVASYRLARLAARVFAGKLSKSSLTDISINLTRSLCMAGNADDAIEECKYLESKG
LLDVDGLQLYALSYWKLGKYDLALSMAKRLASSALPTEHPLAAASVSFICRLVYHISGKE
LAMRNILQLPKRAFQSSRVRLVVSAIHALDESHQLDSVVSSVRESLSSSKEIAALDFMAT
LGLLVKHGSKDCLEVQQGVNYLRRALHISPNSHLIRTLLGYLLVASKEWKDVHISARCFR
VDPSEHQKKEGVKSSVEIFGAGAVACCNVGSGKKTLAMSICRENSTLECKTIKMLQKCVH
QEPWDHHSYYLLVLNYLQKAREKKFPRNLCVVLERLINVALRSELYAKDEISSQYQKFQL
LLCAAEVSLHCGNNFKCIMHAKSALEMQLPDNYLFFAHLLLCRAYAVEDNYSGLHEEYIR
CLELKTDNHIGWICLKFLESRYKLQSDSSSLALAFQECGKEIKTSWNMWIAMYNLVQGLT
AVWNGEFIDAEESLAQACLLAGGESCLFLSHGVICMEIARQQSDSDFLSLAIRSLKKAKD
SSSTPLPFVSLLLAQAEASLGSESKWEKNLNEEWSSWRPEIRPAELFFQMHLLARRLTEG
SGAISNLEPSTSPLRWILQAIHINPSCLRYWRALLKFME
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtagaagacgatgctgctataatacggttagaagaagcgattgtctcccagccc
ggcgacccttctctccactttgatctcggagtcttattatggggcaagggaggagaattg
ccagatattcaggagaaagccgcacaacattttctcatagcagccaagctcaacccacaa
aacgctgctgctttcacatatttgggacattactatgctcgagtagctgtcgactctcag
agggctatcaagtgttatcagagagcccttggccttaatccagatgattcaattgctggg
gaagcaatttgtgatatactggacgcaactggaaaagagaccttggagatagctgtatgc
cgtgaagcttcacacaagtcgcccagggccttttgggctttatgcagattgggttacctt
ctggtcaaccaaaacaagtggtccgaagcagtgcagagtcttcagcaggccatcagaggc
tatcccacatgtgctgatttgtgggaggccctgggtctatcctaccagcaaatgggcatg
tttacagccgctgttaagtcctatggaagagctattgaattggaggaatcacgagtattt
gcactggtagaaagtggaaatgtctatttgatgcttggttcgtttcgaaagggaatagag
cagtttcgacaagctttacaaatctcacctctgaatttgtccgcacatcatgggcttgcc
tctgcactccttagtttggcaaaggaatctattgattctggtgcctttaaatggggagct
tcactcttagaggaagcttcaaaggtggctctagcaagtacttccattgttggcaatata
tcttgttcttggaagcttcttggagatattcagctcacatacacaaaatgttttccatgg
atggatgaaggattgggctcaggagctgacgaaaattcattcagtagttcgatcctgtca
tggaagagaatctgctgtttagcagtcagatctgcttgtcgctcctaccagcgggcattg
catttgtccccttggcaagctaatgtgtatactgatgttgccattgcatctgagcttctt
ttctcgttaaaggagaactgtaaagatgacatgaacccttggtttgtgtctgaaaagatg
tgccttggaggcttattgcttgaaggttgcaatagcgagttttgggtagccttagggtgt
ttatctgatcattctgcattaaagcaacatgctttcatacgagcactgcagttggatgtt
tctcttgctgttgcgtgggcatatcttggaaagctttataggcaggagggggaaagtcaa
ttggctcagctagcatttgatcgtgcaagaagtattgatccttcactttcattgccatgg
tcaggcatgtcagctgatgctgctgcaaggaatctgaaaccagacgaggcttatgagtgc
tgtctgcgggcggttcagatctttccacttgcagaattccaaacaggtctagttaagctt
gctctgcagtctggttatctgcgatctccagaggcatttggagccatccagcaggctttg
cagcgcgcacctcaatatcctgaatctcacaatctgaaagggctagtttgtgaggcacgg
agtgattatgaaagtgctgttgcttcatatagactggcacgccttgctgccagagttttt
gcaggaaagctttcaaaatcatctcttacagatatatcaattaatttgaccaggtcactt
tgtatggcaggaaatgctgatgatgctattgaagaatgtaaatatttggaaagcaaaggt
cttctggatgtagatggtttgcagctttatgcgctttcttattggaaacttggaaaatat
gaccttgctctttcgatggcaaagagactggcgtcatctgctttaccaacagagcaccca
ttggctgctgcctccgtcagtttcatctgtagattagtatatcatatttcagggaaggaa
ttagctatgagaaacatattacaactgccaaaaagagccttccagagttcaagagttagg
cttgtagtatctgctattcatgcattagatgaaagtcatcagcttgactcagttgtttca
agtgttcgtgagtctctttcatctagcaaagagattgctgcgctggatttcatggccaca
ctgggcttactagtcaaacatggatctaaggactgcctagaagttcagcagggggtcaat
tatctaagaagagctcttcatatttctccaaacagtcatttgataaggacccttcttggc
tatctgttagtagccagcaaagaatggaaagatgttcacatttcagctcgatgcttcaga
gtggatccttctgaacatcagaaaaaggaaggtgttaaatccagtgttgagatttttggt
gctggagcagttgcttgctgtaatgtggggagcggcaagaagacactagcaatgtccatc
tgtagagaaaattcaacactggagtgcaaaacaatcaagatgctgcagaagtgtgtccat
caggagccttgggaccatcattcatattacctccttgtactaaattatcttcagaaggcg
cgggagaagaaatttcctcgtaacctgtgtgttgttcttgagaggttgataaatgtggct
cttcgaagtgagctttatgcaaaagatgagatttcttcccagtaccaaaagttccagctt
ctgctttgtgccgcagaggttagtttgcattgtgggaataatttcaagtgcattatgcat
gcaaaaagtgctctagagatgcagcttccagataactacctcttctttgcacacttgcta
ctgtgtcgtgcctatgctgtcgaagataattattcagggcttcatgaagagtacataagg
tgcttggagctcaaaactgataatcatattggttggatttgtcttaagtttcttgaaagt
cgatacaagctgcagtcagattccagttcactagccttggcctttcaagagtgtggcaaa
gaaataaaaacttcgtggaacatgtggattgctatgtataatttggttcaaggtctaact
gcagtttggaatggggaatttattgatgcagaagagtcccttgcgcaagcttgcttgttg
gctggtggcgagagttgcctttttcttagccatggtgttatttgcatggagattgccagg
cagcagtccgattcagattttttatcacttgctattagaagtctgaagaaagcaaaagac
agttcttcaacgccgctaccctttgtctcactgctattggcacaagcagaagctagcctc
ggctctgaatcaaagtgggaaaagaacctcaatgaggaatggtcatcttggcggccagag
attaggcctgctgaactgtttttccagatgcatttgcttgctagacggctgacagaaggt
tctggagctatatccaatctagagccatctacaagtcctctaagatggatacttcaagct
atccatatcaatccatcttgtttgagatattggagagctttgctgaaatttatggagtaa
DBGET
integrated database retrieval system
