Solanum tuberosum (potato): 102593766
Help
Entry
102593766 CDS
T02981
Name
(RefSeq) protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1
KO
K11661
helicase SRCAP/SWR1 [EC:5.6.2.-]
Organism
sot
Solanum tuberosum (potato)
Pathway
sot03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
sot00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
102593766
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
sot03036
]
102593766
Chromosome and associated proteins [BR:
sot03036
]
Eukaryotic type
Chromatin remodeling factors
SRCAP complex
102593766
SWR1 complex
102593766
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
HSA
ResIII
DEAD
Myb_DNA-bind_6
DBINO
Cas3-like_C
Myb_DNA-binding
Motif
Other DBs
NCBI-GeneID:
102593766
NCBI-ProteinID:
XP_006344109
LinkDB
All DBs
Position
Un
AA seq
2212 aa
AA seq
DB search
MVQANPSLPTTEIVEKCCGSQSRSHVFGFGGGLKAKDLKGGTSSKAELLSVLRSTREDIK
SLNEENKSLNEENKSLNDRLSTIEDEMKEIMKMKDSSLLNNPMGKSGFSPIPNFPFNRTS
VAKFSHSAAAAAVPPLLPRLFSTGALRSPYLASSSSLPKKKPESWCIYLEIIMASKGYKC
KPDHETRVRRQKGLEAPKEPQRPKTHWDHVLEEMVWLSKDFESERKWKLTQAKKVAIRAS
KGMLDQATRGEKRVKEEEQRLRKVALNISKDIKKFWLKIEKLVLYKHQLEVDEKKKKTLD
KQLEFLLGQTERYSTMLAENLVSSPSTCKRTNSLPAPEAFRIQCKEGSEGDVTNRDCVGK
NLQPLSTGSDIDDDFGVQSEDEMEDDEHTIEEDEAVITKEEREEELAALQNEMDLPLEEL
LKRYAIGEASRDCSPEKSGADVTVSSGKGRDKCRDVDVATETDKGCSPEISGRRSVESNG
VLSVPNNYCSDLGKDKLRSPRKKYQEFNQINLLDDFNDEQDDDDYVLAVGEDKGYNMDDE
TTLLEEEELANAEANDAADEIALLQKESELPLDELLARYKEDFDTDEDAVDDSESYASAS
DDLLESPAHNESEPIQVNDGLCDVLPTTVAENEEKEVESVDKTGEERQSEDIIADAAAAA
RSAQPTGSTFSTTKVRTKFPFLLKFPLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTI
MTIALLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKIKRQG
WLKPNSFHICITTYRLVIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRI
LLTGTPLQNDLMELWSLMHFLMPHIFQSHQEFKDWFCNPISGMVEGQEKVNKEVVDRLHN
VLRPFILRRLKRDVEKQLPSKHEHVIYCKLSRRQRNLYEDFIASSETQATLASSNFFGMI
SVIMQLRKVCNHPDLFEGRPIVSSFDMSGIDMHLSSSICSMLSPGIFSTVNLGALGLLFT
HLDFSMTSWESNDVQSIATPSSLIEGRVSLIHGEETSQGLKRNKKFHGTNIFEEIQKALA
EERLREAKERAAAIARWNSIKCKQKPVYSTSLREIVTVKHPVHGIYCQKSNPLSFLYSAR
LAESILTPVERFQQMVDQVETFMFAIPAARSPAPACWCSKPGTSVFFSPTFKETCSEVLS
PLLTPFRPAIVRRQVYFPDRRLIQFDCGKLQELAGLLRRLKSEGHRALIFTQMTKMLDVL
EAFINLYGYTYMRLDGSTPPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIF
YDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDDLVIQSGS
YNTEFFKKLDPMELFSGHRTVSLKNIEVEKNSNVTEVQLSNADVEAALQNVEDEADYMAL
KKVEEEEAVDNQEFTEEAIVRLEDDELGNDDETKADEPGDHEAPVTTSSKELVAVSNVSN
PLKEQAITFAGKEDDIDMLADVKQMAAAAAAAGQAILSFESQLRPIDRYAVRFLELWDPI
IDKTAIESQGHFEETEWELDRIEKLKEDMEAEIDDDEEPLVYERWDTDLATEVYRQQVET
LAKHQLKEELEAEAKEKELAEYENSMAHTSSVPKTKSKKKAKKTKFKSLKKGGLASERQA
LKEESSIELMPIDDDNLSSEPVTTPDSAQERKRKLPRYDEDVKGAKKSKKMKKSSEVSSL
VLHSTYHGKRQVESKELKQYDVGTMNIELRPISRSKMGGKILISPMPVKRVFSIKSERPI
RKGKTWSKDYFPSADSWLQQEDAVLCASVHEYGPHWSLVSDILYGMTAGGAYRGRYRHPL
HCCERFRELIQRYVLSAADNVNDRSNNTGSIKGLLKVTEENVRLVLDIASEIPDHEPLVQ
THFFALLSSVWKVQKSLTNTFSSSQNGFFHSGSLFSPIMNRVSTNYSMVPPVRRFSNSSV
CTKLVAVALSDQQSAQSDERVRICDQREEASFPSEHLDITLEFGAEKDDKTIPLLHPVTV
KILGPESSLFPRMTTAEHHHFKSSQIMAENRFWAASSSEGCLDWASLAFPIGDAKSRTPL
KSQFLGKHMPSDSVKVSKSKSRKILMESSDVGHTKDLLFPPMPSVSDDSCPTADVGFSFL
TESGNDFEDRTLLDLNPVFNAGSEDVLCHEYVPEFISGLDDWSVFPEFTDIG
NT seq
6639 nt
NT seq
+upstream
nt +downstream
nt
atggttcaagccaatccatccctacctactacagagattgttgaaaaatgttgtggatct
caaagtcgtagccatgtatttggatttgggggtggattaaaggcaaaagacttgaaaggt
ggaacttcttcaaaggctgaattgttgtccgtgctacgttcaactcgagaggatatcaaa
tccttgaatgaagaaaacaaatccctgaacgaggaaaacaaatctttgaatgatcgcttg
tctaccatagaagatgagatgaaagaaataatgaaaatgaaagattcttcgctgctcaac
aatcccatgggtaaatctggtttcagtcccattcccaactttccctttaatcgaacctcc
gtcgcgaaattttctcactccgccgctgccgctgccgtgccgccgttgctaccgagattg
ttttccaccggtgctcttcgctcaccttatctagctagttcttcttctttaccgaaaaag
aagccagaatcatggtgtatatatcttgagattatcatggcttctaaagggtataagtgt
aagccggaccatgaaacacgtgtacgacgccaaaagggtcttgaagcacctaaagaacct
caacgacctaaaacacactgggatcatgttcttgaggagatggtctggttgtcgaaggac
tttgaatcagagaggaagtggaagttgactcaagcaaagaaggttgctatacgagctagc
aagggaatgcttgatcaggcgacacggggagaaaagcgagtcaaggaagaagagcaacgt
ctgcgtaaagttgcactcaatatctcaaaggacatcaaaaaattttggttgaaaatagag
aagctggttctttacaagcatcagttagaggtagatgagaagaagaagaaaacacttgat
aagcagctagagtttcttcttggacaaacagaaaggtactcaacaatgcttgcagagaat
cttgtaagttcaccaagtacttgcaaacgaaccaattctttgcctgcaccagaagcattt
agaatccagtgtaaagaagggagtgaaggggatgtaacaaatcgtgactgtgttggaaaa
aatcttcaacctctttcaactggtagtgatattgatgacgactttggcgtgcaatctgaa
gacgaaatggaagatgacgagcataccattgaagaagatgaggctgttataactaaagaa
gaaagggaagaagagttggctgctttacaaaatgaaatggatctacctcttgaagagctc
cttaagcgttacgcaattggggaagctagcagagactgtagccccgagaagagtggtgca
gatgttacagtcagttctggcaagggcagggataaatgtagagatgttgatgttgctact
gaaaccgacaaaggctgctcacctgaaatttctggtcgtcgttctgttgaaagtaatggg
gtcttatcagttccaaataattattgttctgacctagggaaagacaagctaagaagtcct
cgaaagaagtatcaggagttcaaccaaattaatttgttggatgactttaatgatgaacag
gatgatgatgattatgtccttgctgttggtgaagataaaggatacaatatggatgatgaa
acaactttgttagaggaggaggagttggcaaatgcagaggcaaatgatgctgctgatgag
attgcgctgttgcaaaaggagagcgaacttcctttagatgagctccttgctaggtataaa
gaggattttgatactgatgaagatgctgtcgatgattctgaatcatatgcgtctgcttct
gatgatctcctggaatcaccagcacacaatgaatctgaacccattcaagtaaatgatgga
ctgtgtgatgtactgcccactacagtcgctgagaacgaagaaaaggaagttgaaagtgtg
gataaaacaggggaagaaaggcagagtgaggatataattgctgatgcagcagctgctgcc
agatccgcacaaccaacgggtagcaccttctcaacaaccaaagtgcggactaagttcccc
ttccttctaaaatttccccttcgtgagtatcaacatattggtttggattggcttgtgacc
atgtatgagaagaaacttaatggaatcctagcagatgaaatgggtttggggaagactatc
atgacaattgctcttcttgctcacctagcatgtgaaaaaggaatatggggtcctcatctt
attgttgtcccaactagtgtcatgctaaactgggagactgagtttcttaaatggtgtcct
gctttcaaaatcttgacatattttggcagtgctaaagagcgaaagattaaaaggcaaggc
tggttgaagccaaactcatttcatatatgtatcacaacttacagactcgttatacaagac
tccaaagttttcaagcgtaagaagtggaaatacctaattttagatgaagctcatctaata
aagaattggaaatcgcagagatggcagacacttctcaactttaactcaaaacggcgtata
cttttgactggtacaccattgcagaatgatctcatggagctgtggtctctaatgcatttc
ttgatgcctcatattttccagtctcaccaagaattcaaagattggttctgtaatcctatt
tctggaatggttgagggacaagaaaaggttaataaggaagttgttgatcgcttgcataat
gtccttcgtccctttattcttcgccgtttgaaaagggatgtggagaagcagcttccttca
aaacatgagcacgtaatttattgtaagctctcaaggaggcagcgtaatttgtatgaagac
ttcattgctagttcagagacacaagccactctagctagttcaaacttttttgggatgata
agtgtaataatgcaacttcgtaaagtgtgcaatcatcctgacttatttgaaggacgtcca
atagtgagctcctttgatatgagtggtattgatatgcacttgagctcttccatttgctcg
atgctttcacctggtatattttcaactgtcaaccttggtgctttgggattgttgtttaca
catcttgatttttcaatgacgtcttgggagagtaatgatgttcaatccatcgctactcca
tcaagcttgattgagggtcgtgtgtctctgattcatggtgaagaaacttctcaaggactt
aaacggaataagaagtttcatggaacaaacatatttgaagagatccaaaaggcacttgct
gaggagagactgagagaagcaaaggagagagcagcagctattgcacggtggaattccata
aagtgtaagcagaaacctgtatattctacaagtcttcgggagattgttactgtgaaacat
ccagttcatggcatttactgtcaaaaaagtaatcccttatcatttttgtactccgctagg
cttgcggaatcaatactgacaccagttgagagattccaacaaatggttgatcaggttgag
actttcatgtttgcaatccctgctgcacgttccccagcacctgcttgctggtgcagtaaa
ccaggaacttctgtatttttcagtccaacctttaaagagacatgttctgaggttctttct
cctcttctcactccttttcgcccagccattgttagaaggcaagtctactttccagatagg
cggcttatacaatttgactgtggaaagctgcaggagcttgcaggtttgttgaggcgatta
aaatcagaaggtcaccgtgcattaattttcacccaaatgacaaagatgcttgatgtttta
gaagctttcattaatttgtatggttacacttacatgcgtttggatggttctactccgcca
gaagagagacaaactttgatgcaacgtttcaacacgaatccaaagattttcctgtttatt
ttatcaacccgtagtggtggagttggcatcaacttggtgggtgcagacacagtcatattt
tatgatagtgactggaacccagctatggatcaacaagctcaagatcgctgtcatagaata
ggccagacccgtgaagtacacatttatcgattgataagtgagagcaccattgaagagaat
attttgaaaaaggcaaaccagaagcgtgctctggatgatttggttatacagagtggaagt
tacaacactgaattctttaagaaactggatccaatggaattgttctccggccacagaaca
gtttccttaaagaatattgaagtagagaagaatagcaatgtcactgaggttcagctttct
aatgctgacgtggaggctgctttgcaaaatgtagaagatgaggcagattacatggctctg
aagaaagttgaagaggaagaggcagtagacaatcaggagttcactgaagaagcaattgtc
aggttggaagatgatgaacttggtaatgatgatgagacgaaggctgatgagcctggtgat
catgaagccccagttacaacatcaagtaaagaacttgtggcagtgtcaaatgttagcaat
ccattaaaagaacaagcaattacttttgctggtaaagaagatgacattgacatgctggct
gatgtcaaacagatggcagcagcagctgctgctgccggacaagctatcttgtctttcgag
agtcagctacgtccaattgatcggtatgctgtacgttttctggagttatgggaccctatc
atagacaagacagctattgagtcacaaggtcattttgaagaaactgaatgggaattggat
agaattgaaaagttgaaggaagatatggaagcagagattgatgatgatgaagagccttta
gtttacgagagatgggatactgatttagcaactgaggtatacagacaacaggttgagact
ttggcaaagcatcagttgaaggaggagctggaagctgaagccaaagagaaagagcttgcg
gaatatgagaactccatggcgcatacatcttctgtcccaaaaaccaagtcgaagaagaag
gcgaagaaaacaaagttcaaatctttgaaaaaaggaggtctagcttctgaacgtcaagct
ttgaaggaagagtcttcgatagagttaatgcccatagatgatgataatctatccagtgag
ccagttacgacgccggattctgctcaagagagaaagcgtaaactaccaagatatgatgag
gatgtgaaaggcgccaagaagtctaaaaaaatgaagaagtcctctgaggtatcttctctg
gtactacattcaacatatcatggaaagaggcaggttgaatctaaagaattgaaacagtat
gatgttggcacgatgaacattgaactcagaccaataagcagaagcaagatgggagggaaa
atcttaatcagtccaatgcctgttaaacgagtcttttctattaaatcagaaaggccaatt
aggaaaggtaaaacatggtctaaagattattttccatcagctgattcatggttgcaacaa
gaagatgctgtactttgtgcttctgttcatgagtatggtcctcactggagcttggtgagt
gatatcctgtatggaatgactgctggcggtgcttatagaggaagatatcgtcaccctctt
cattgttgtgagaggtttagggaactcatacagagatatgtgttatctgctgcagacaat
gtaaatgatagatccaacaatactggttctataaaaggtcttctcaaagtgactgaggaa
aatgtccgactggtgttggatattgcatcagagattccagatcatgagccacttgttcaa
acacatttctttgcccttctttcctctgtgtggaaagtgcagaaaagtctcacaaatacg
ttctcatcttcccagaatggattctttcattctggaagtttattttcaccaattatgaac
cgtgtttcgacgaattactcaatggttccaccggtaaggagattttctaattcaagtgta
tgcaccaagttagtagcagttgctctttctgatcagcagagtgcacaaagtgatgagaga
gtccgcatctgtgaccagagagaagaagcttcttttccttctgagcatttggatattaca
ctggaatttggggcagagaaagatgataagacaattcccttgctacatcccgttactgtc
aaaatacttggtcctgaatcttcattgtttccaagaatgacaacagctgagcatcatcat
ttcaagtcttcccagattatggctgaaaaccgattctgggctgcatcaagtagtgaaggt
tgtttagattgggcttcccttgcttttcctattggggatgccaagtcacgtactccgttg
aaatcacaatttttggggaagcatatgccctctgattcggtgaaggtatcgaaatctaag
tccagaaagattttaatggaatctagtgatgttggtcataccaaggatctattgtttccg
ccaatgccatctgtgtctgatgattcctgtccaacagctgatgtgggattttcattcctt
acagaaagtggaaatgatttcgaagataggaccctgttagacctaaatccggtatttaat
gcagggagtgaggatgtactctgtcatgaatatgttcccgaatttatatcgggacttgat
gattggtcggtgtttccagagttcacagatatcgggtag
DBGET
integrated database retrieval system
