Solanum tuberosum (potato): 102596167
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Entry
102596167 CDS
T02981
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
sot
Solanum tuberosum (potato)
Pathway
sot03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sot00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102596167
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sot03041
]
102596167
03009 Ribosome biogenesis [BR:
sot03009
]
102596167
Enzymes [BR:
sot01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
102596167
Spliceosome [BR:
sot03041
]
Complex A
U1 snRNP components
U1 related factors
102596167
Complex B
102596167
Ribosome biogenesis [BR:
sot03009
]
Eukaryotic type
Pre-60S particles
Helicases
102596167
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
P-loop_SecA
Cas3-like_C_2
CREG_beta-barrel
Gsf2
Motif
Other DBs
NCBI-GeneID:
102596167
NCBI-ProteinID:
XP_006362049
LinkDB
All DBs
Position
Un
AA seq
558 aa
AA seq
DB search
MSYVPPHLRNSAAGKTTTTPTINSKGADHFSSKHTSRIPSLEKSSNGYSNSARRSSLNYS
LPNTVAVPDPAFPHWKPSERVLRLKSEQIEEIRLRLNVDVNVSPGSCPAPSPIESFPDMC
LDASIMKDIEKHGYTAPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFSIPMIQHCLAQQ
PLQRGDGPLALVLAPTRELAQQIEKEVTAFSMSLDSFKTAIVVGGTNISEQRSELRAGVH
IVVATPGRLIDHLQQGNTSLSRIAFVVLDEADRMLDMGFEPQIREVMRNLPVKHQTLLFS
ATMPAEIEALAQDYLTNPVRIKVGKVSSPTANVSQTLEKVPENDKIDHLLDLLVEEAAQA
EKSGHPFPLTIVFVERKTKCDEVAEALTQQGLLATALHGGRSQNEREAALRDFRHGPINI
LVATDVASRGLDVTGVAHVINLDLPKTMEDYVHRIGRTGRAGSTGRATSFYTDRDMYLVA
QIRRAIADIGSGNDVTIAMGKTARRKEREAAAAEKEARSELSKLSLVGSTVNVEDKYRHM
IAPSMIKKEGAADDAWDD
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgtcttatgtacctcctcacctgagaaattctgctgccggaaaaaccactaccacccct
actataaacagtaaaggcgccgatcacttctcttccaaacacacatccagaattccttct
ctcgaaaagtcttccaacggttactccaattcagctcgccggagctccctcaattactcc
ttgcccaacactgttgctgtccctgaccccgcgtttcctcactggaagccttccgaacgt
gttcttcgtcttaaatccgagcagatagaagagattcgactgcggcttaatgtagatgtc
aatgtttctccaggctcatgtcctgcaccctcacctattgagtcatttcctgatatgtgc
ttggatgcaagtataatgaaggatattgaaaagcatggctacactgcaccgacttctatt
caggctcaagccatgcctgttgctcttagtggcagggatctcttggggtgtgcagaaact
ggtagtgggaagactgctgcattcagcatacctatgatacagcattgcctggctcaacaa
cctcttcaacgtggtgatggacctttggcattagtgttggcacctacaagagagcttgca
caacaaatagagaaagaggttacggctttcagcatgtctttggattcctttaagaccgca
atagttgtaggtgggacaaacattagtgagcagaggtctgagcttcgagcgggagtacat
atagttgttgctactccgggaagacttatagatcatttacaacaaggaaatacttccctc
agcaggattgcttttgtagttttggatgaggctgatagaatgcttgacatggggtttgaa
cctcagataagagaggtgatgcgaaatcttccggtaaagcatcaaacactgctctttagt
gccaccatgccagcagaaattgaagcattggcacaggattacttgactaatcctgtgcga
ataaaagttggaaaagtaagcagcccgacagcaaatgtttcccagactttagagaaggta
cccgaaaatgataagattgatcaccttttggatttgctggttgaggaggctgctcaagct
gaaaaatctggccatcctttccctttgaccattgtatttgtggaacggaagacaaaatgt
gatgaagtagcagaagctttaacacagcagggtttgcttgcaactgcacttcatggtggt
cgaagccaaaatgaaagagaggctgcccttcgtgattttagacatggacctatcaatatc
ttggttgctactgatgttgcgtctaggggattggatgtcacaggagttgcacatgtaatt
aacctagatcttccaaagaccatggaagattatgtacaccggattggaaggactggtcgt
gcagggtcaacgggccgagctacttcattctatactgatcgtgatatgtatcttgtggct
caaataagaagagcaatagctgatattggttctggcaatgatgtgaccattgctatggga
aagactgcaagaagaaaggagagagaagctgcagctgcggaaaaagaagcaaggagtgaa
ttgtctaaactctctttagtagggtccacggtaaatgtggaggataagtataggcacatg
attgccccatcaatgatcaaaaaggagggagccgcagatgacgcttgggatgactga
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