KEGG   Solanum tuberosum (potato): 102596351
Entry
102596351         CDS       T02981                                 
Name
(RefSeq) sm-like protein LSM1B
  KO
K12620  U6 snRNA-associated Sm-like protein LSm1
Organism
sot  Solanum tuberosum (potato)
Pathway
sot03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sot00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    102596351
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sot03019]
    102596351
Messenger RNA biogenesis [BR:sot03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     102596351
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     102596351
SSDB
Motif
Pfam: LSM Hfq
Other DBs
NCBI-GeneID: 102596351
NCBI-ProteinID: XP_006357408
UniProt: M1A187
LinkDB
Position
Un
AA seq 128 aa
MSWASSEDIYLSTSLASYLDKKLLVLLRDGRKLLGTLRSFDQFANAVLEGACERVIVGEI
YCDIPLGLYIIRGENVVLIGELDVDKEELPPHMTRVPEAEIRRAQKAEREATDLKGTMRK
RMEFLDMD
NT seq 387 nt   +upstreamnt  +downstreamnt
atgtcttgggcaagttcagaagatatttatctctctacttctcttgctagctatcttgat
aagaaacttctagtgttactgcgagatgggcggaagcttttggggacgcttcgttctttt
gaccaatttgctaatgctgttctagaaggtgcgtgtgagcgtgttattgttggtgaaatc
tactgtgatattccattaggtctttatattatacgaggggaaaatgtcgtgttaattggc
gagttggatgtagataaggaggaacttccaccccacatgactcgtgtcccagaagctgag
ataagaagggcccaaaaagcagaaagggaggctacagatcttaaaggtacaatgagaaag
aggatggaattccttgatatggattga

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