Solanum tuberosum (potato): 102596652
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Entry
102596652 CDS
T02981
Name
(RefSeq) protein SMG7-like
KO
K14409
protein SMG7
Organism
sot
Solanum tuberosum (potato)
Pathway
sot03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sot00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
102596652
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sot03019
]
102596652
Messenger RNA biogenesis [BR:
sot03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
102596652
mRNA cycle factors
Common to processing body (P body) and stress granule
102596652
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
Motif
Other DBs
NCBI-GeneID:
102596652
NCBI-ProteinID:
XP_006348034
LinkDB
All DBs
Position
Un
AA seq
992 aa
AA seq
DB search
MTIPMDSNLDHSSRERVQRLYNKNVELEKKRRKAAQARVPSDPSAWQQMRENYETIILED
HVFSEQHEIEYALWQMHYRRIEELRAHFNAAANSSGSTNGKGPPTSGPDRVTKIRTQFKT
FLSEATGFYHDLMLKIRAKYGLPLGYNSDDPENQTPSSKDGNKSVELKKGLISCHRCLIY
LGDLARYKGLYGEGDSKARDFAAASSYYLQASSLWPSSGNPHHQLAILASYSNDELVAIY
RYFRSLAVESPFATARDNLIIAFEKNRQCYTNMLGDTKVSSTKAVPPRTTGKGRGKGETM
QPMKDDKVEAISVQEKASSMSDIFKTFTTRYVRLNGILFTRTSLETFGEVQLVVKNDLLE
LLSSGPDEKYNFGSDAADCRQAIVRLVAILIFTVHNVNRESENQSYAEILQRSVLLQYSF
TAVFEFMGHVVERCVQLNDPTTSFLLPGVLVFVEWLACHQDVALGNEPEEKQMTARSFFW
KNCIAFFNKLLSSGFKFVDDDKDEMCFFNMSRYDEGESGNRLALPEDFELRGFLPLLPAQ
LILDFSRKHSFGGDGGIKEKKSRLQRIIAAGKALASVVRVGEEGIYFDSTAKKFIIGIEP
QVSDDYVHSCAMEVPKLSGIELENPAARQLTVGAPQPKQQLYVECEEEDEVIVFKPSVAE
KHVNGSASNMSTTEVPVSCVGAAKVPPGISIASSCLGNEMGPSSAALDELIMPSALHASV
RPPSTIANNSGQYMQPIQPNTSMWSVEQGAYMNGLASLNLIGSGLTIKSDLQDHSGVFPP
APYSIPFPQSLNFSIANNIPAQVPDAAIPTNFSSLSSQIVGIDSMSIKSPSVMSTSIKKN
PVSRPGRHLGPPPGFGSVPSKVVDESSSAMTVKIEHSLPPMDDYSWLDGYQLSSSNQSIG
FNNSINHSTQNYHSMSKSSSSVGMVSFPFPGKQVNSLHVQSGNQKGREDYQISDQLKLYQ
EQPQQLKSVNQQSVALPQQHQGQSMWERRFFV
NT seq
2979 nt
NT seq
+upstream
nt +downstream
nt
atgaccattccaatggatagtaatttagaccattcatctcgggagcgagttcaacgcctc
tacaacaagaatgttgagttggagaagaaacggagaaaagcagcacaagctagagttcct
tctgatccaagtgcatggcaacaaatgcgagaaaactatgaaactatcatcctggaggat
catgttttctcagaacaacatgaaatagagtatgccttgtggcagatgcattacaggaga
attgaggaactgcgggcacacttcaatgctgctgcaaattctagtgggtcaaccaatggg
aagggtcctcctactagtggaccagatcgcgtcacaaagatcagaacacagtttaaaact
ttcctttcagaagcaacaggtttttaccatgatttgatgctaaaaattagggccaagtat
ggtctgccactgggatataattctgatgatccagagaatcagactccttcctctaaagat
ggtaacaagtctgtggagttgaagaaaggattgatatcgtgccatcgttgtttgatttat
cttggtgatcttgctcggtacaaaggcttatatggtgagggtgattctaaagctcgtgat
tttgcggctgcttcgagttattacctgcaagcttcttcactttggccttcaagtggtaat
cctcatcatcagcttgcaatactggcttcctattccaatgatgagctggtggctatttat
cgctattttcgcagtcttgcagtagaaagcccttttgccactgcaagggacaacttgatt
attgcatttgagaagaaccgtcagtgttacaccaatatgctgggggatactaaagtttcc
tccaccaaggcagtacctcctcgcacgactggaaaaggaagaggcaaaggagaaacaatg
caaccgatgaaagatgataaggttgaagcaatctctgttcaggaaaaagcttctagtatg
tcagacatcttcaaaaccttcaccacgagatatgttcgactaaatggcattcttttcact
cgcactagcttggagacttttggagaagtgcagttggtggttaagaatgatctgcttgag
cttctctcttctgggcctgatgagaagtataattttggttcggacgctgccgactgtaga
caggctattgtgaggcttgtggctatcctgatattcactgttcataatgtgaacagagaa
agtgaaaatcagtcatatgctgagatcttacagagatctgttcttctacagtattcgttt
actgctgtttttgagttcatgggtcatgttgttgagagatgcgtccaattaaatgatccc
acaacaagcttccttttgcctggtgttttggtgtttgtggagtggttggcatgccatcaa
gatgtggcacttggcaatgaaccagaagagaaacaaatgacagctagatcatttttttgg
aaaaactgtattgctttctttaataagctattgtccagcgggttcaagtttgttgatgac
gacaaggatgaaatgtgctttttcaatatgagcaggtatgatgaaggagaaagtggtaat
cgtcttgcattgcctgaggattttgaactgagaggatttctacctcttcttccggcacaa
cttatccttgatttttcaaggaagcattcttttggtggtgatggtggcatcaaagagaag
aaatcacgtctccagaggataatagcagcaggaaaggctcttgctagtgtggtccgtgtt
ggagaagagggaatatattttgacagcacggcaaagaaattcatcattggcattgagccc
caagtatctgatgattatgtacatagttgcgcgatggaagttcccaaattaagtggtatt
gagctggagaatccagctgcaaggcagttaactgtaggagctccgcagccaaagcaacaa
ttgtatgtggagtgtgaggaagaagatgaggtaattgtctttaagccatctgtggcagaa
aagcatgtcaatggaagcgcttcaaacatgtcgaccacggaagttccggtttcttgtgtt
ggtgctgccaaggttcctcctggcattagcatagcctcttcttgtctaggaaatgagatg
ggcccatcttcagctgcacttgatgaattgatcatgccgagtgctttgcatgctagtgta
aggccaccctcaactattgccaataacagtggccaatatatgcagcctattcaaccaaat
acttcaatgtggtccgttgaacagggtgcttatatgaatggattggctagcttgaacttg
ataggaagtggtctgactataaaatctgatttgcaagatcattcaggagtatttccacct
gcaccatattcgatcccttttccacagtctctcaattttagcatagcaaataatattccc
gctcaggttccagatgctgctataccaactaacttcagttcactttcatcccaaatagtt
ggtattgacagcatgtcaataaagtctccatcagtcatgtcaacaagcataaagaaaaat
ccagtcagcagacctggtaggcatctgggtccacctccaggctttgggtctgttccttcc
aaagtcgtggatgaatcttcatcagcaatgaccgtaaagattgaacattctcttcctccc
atggatgactatagctggctggatggatatcagttgtcttcatcaaatcagagcattggt
ttcaataactccattaatcattcaacacaaaactaccactccatgagcaagagcagtagc
tcagttgggatggtaagttttccgttccctgggaaacaggtaaactctctgcatgtacaa
tcagggaaccagaaaggtcgggaggactaccagatatctgatcaattaaaactgtaccag
gagcaacctcagcaactcaagagcgtaaatcaacagtctgttgcactgcctcagcagcat
caaggacagtctatgtgggaacgccgtttctttgtgtga
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