Solanum tuberosum (potato): 102596658
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Entry
102596658 CDS
T02981
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 24
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
sot
Solanum tuberosum (potato)
Pathway
sot03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sot00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102596658
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sot03041
]
102596658
Enzymes [BR:
sot01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
102596658
Spliceosome [BR:
sot03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
102596658
Complex B
102596658
Complex C
U2 SnRNP specific factors
102596658
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
102596658
NCBI-ProteinID:
XP_006349177
UniProt:
A0ABQ7WN45
M1AI31
LinkDB
All DBs
Position
Un
AA seq
774 aa
AA seq
DB search
MSKRKFGFEGFGINRQTTYNFERNQAPQRLYVPPSSRSGGSHDNYEDTDLDNIEYDDHEA
VGGNNDDGGGGGGEDDEIDPLDAFMEGIHEEMKAAPPPKPKEKLDKYKDDVDDDPMESFL
RAKKDVGLQLAADALHAGYNSDEEVYAAAKAVDAGLVEYDSDDNPIVVDKKKIEPITALD
HSEIDYEPFNKDFYEEKPSISGMSDQEVNEYSTSLAIRVSGFDVPRPIKTFEDSGFSVEL
MKAISKQGYEKPTPIQCQALPIVLSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKE
EGPIGVICAPTRELAHQIFVEAKKFSKSHGIRVSAVYGGMSKLDQYKELKAGCEIVVATP
GRLIDMIRKKAFTMLRATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRK
VEKLAREILTDPVRVTVGEIGTANEDITQIVEVIPSDAEKLPWLLEKLPGLIDNGDVLVF
ASKKATVDEIESQLAQKGFRVAALHGDKDQVSRTETLQKFKSGIYHVLIATDVAARGLDI
KSLKSVVNYDIAKDMDMHVHRIGRTGRAGDKDGTAYTLITHKEARFAGELANSLVAAGQT
VSVELMDLAMKDGRFRSKRDARKGGGKRAKGRGGGNNKGVRGVDFGLGIGYNPESNNPPQ
SAAPSRSAAVNSLRTGMMAQFKSSFVAASSKSQNQGMNNTEGTFPNKKMVLQGFVSGGTI
GGNSNTSHNSSTFTAATSGAYTSSQPARDGANQKSSESSKEKSRERRRPSGWDR
NT seq
2325 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagagaaaattcggattcgaaggatttggcattaatcggcaaacaacgtacaac
ttcgagcgaaatcaagctcctcagcgactgtatgttccgccatcctcacgttccggaggt
agccatgacaattacgaagataccgacttagataacattgagtacgatgaccacgaagct
gtcggagggaacaacgatgatggaggcggaggaggtggtgaggatgatgaaattgatcca
cttgatgcgtttatggaagggattcatgaagaaatgaaggctgcaccgcctcctaagccg
aaagagaagttggataagtataaggatgatgtagatgatgatccgatggagagttttctg
agagcgaagaaggatgtagggttacaattggctgctgatgctcttcacgctggttataat
tccgacgaggaggtgtatgctgcagcaaaggcggttgatgcagggttagttgagtatgac
tccgacgataatccaattgttgttgataaaaagaagattgagcctattactgctctggat
catagtgagattgactatgagcctttcaacaaggatttttatgaggaaaagccttctatt
tcaggtatgagcgatcaggaagttaatgaatatagtacaagcttggccattcgtgtatcg
ggctttgatgtaccaaggccaattaagacatttgaagactctggtttttctgttgagttg
atgaaagctatcagtaaacagggttatgaaaagcctacaccaatacagtgtcaagcatta
ccaattgtgctctctgggagagatattattggtattgctaaaactgggtccggtaagact
gctgcttttgtgcttcctatgattgtccacatcatggatcagcctgaactgcagaaagaa
gaaggccccattggagttatttgtgcacccactagggaattagcacatcaaatatttgtg
gaggcaaagaaattttcgaaatcgcatggtatccgtgtgtctgcagtttatggaggaatg
tctaaattggatcaatacaaagaactaaaggcagggtgtgagattgttgttgctactcca
gggaggttgatagatatgatcagaaagaaggcatttacaatgttgagagcaacttatcta
gtgcttgatgaggctgatcggatgtttgaccttggtttcgagcctcagataaggtccatt
gttggtcaaattagacctgatcgccaaacattgctcttttcagcaactatgccccgcaaa
gttgagaagcttgccagagaaatattgacggatcctgtaagagttactgtgggtgagatt
ggcacggctaatgaggatattacacaaatagttgaagtgattccttcggatgctgaaaaa
ttgccttggcttctggagaagctccctggactgattgacaatggtgatgttcttgtcttt
gcttcgaaaaaggcaacagtggatgagattgaatcccaattggctcagaagggatttaga
gttgcagctctccatggtgacaaggatcaagtttctcgtacggagacgctgcaaaaattt
aaatctggcatatatcatgttctcatcgcaactgatgttgctgctcgtggtcttgatatc
aaatcacttaagtcagtggtgaactatgatatagctaaagatatggacatgcatgttcac
agaattgggagaacaggtcgtgctggtgacaaagatggaacggcctacactcttattact
cacaaggaagcacgttttgctggtgaactggcgaacagtttggttgctgctggtcaaact
gtgtccgtggaactaatggaccttgctatgaaggatggaaggtttcggtccaaaagggat
gcaaggaaaggaggtggaaaaagggccaaaggaaggggaggaggaaacaataaaggtgta
cgaggtgtggattttggtctagggattggatacaatcctgaatcaaataaccctccccag
agcgctgctccaagccgttctgcagctgttaattccctgaggacaggaatgatggcacaa
tttaaaagtagctttgttgctgcatcatcaaagtctcaaaatcaagggatgaataacaca
gagggcacgtttcccaacaagaaaatggtcttgcaaggctttgtctctggtgggactata
ggtggaaatagtaatacttcccataatagttccacatttactgctgcaacatctggggca
tatacttctagtcagccagctagagatggagctaaccagaaaagttcagagagttcaaag
gagaagtccagagaaagacggaggccttctggttgggatcgttga
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