Solanum tuberosum (potato): 102596910
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Entry
102596910 CDS
T02981
Name
(RefSeq) protein PAT1 homolog 1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
sot
Solanum tuberosum (potato)
Pathway
sot03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sot00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102596910
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sot03019
]
102596910
Messenger RNA biogenesis [BR:
sot03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
102596910
mRNA degradation factors
5'-3' decay
Decapping complex
102596910
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
102596910
NCBI-ProteinID:
XP_006351984
UniProt:
M1CT62
LinkDB
All DBs
Position
Un
AA seq
816 aa
AA seq
DB search
MERSDCKDFMDLSNSSSSISDSALFDASQYAFFGRDSGEEVELGGLEEEGNNCVPVVDGG
FGDDTHEYHLFEKDEGSALGSLSDIDDLATTFSKLNRNVAGPRHPGIIGDRGSGSFSRES
SSAAEWAKETDFPDCFDQHLSDTECYQENKRWSSQSYFSPVHLSESKPLYRTSSNPEQPQ
QLQRFSSEPILVPKSSFTSLPPPVGRSLQGSPYSLSHHQSMPSLAAGPQSPYSNANLSTL
SNPNIHLPGLSHGLHYGGNMPQWIPPSLSLDTRLQNHWTSHVSLSHGDHSRLLNSLSPHQ
FPQNGLLSPLLISSQQLQQRRLHHLVQPSLAHFSALPSQFNSFPSPAHLGKHGLADFRDS
KSKSSHKGRQNVRFSKLGSEGGSQKSENNVPKFRSKYMTGDEIESILKMQHPATHGNDPY
ADDYYYQARLAKKAAESRSKHRFCPNKEQPSRSRNSTDSQPHLHVDAKGQISFSSIRRPR
PLLEYDPPGFVCNGSGDQKMSEKSLEQEPMLAARITVEDGFYLLLEVDDINRLLQFSQPQ
DGGVQLRRKRQILLEGMAASLQLVDPLGKSGSSVGLTPKDDIVFLWLVSLPKGRKLISRY
LQLLVPGGELARIVCMTIFRHLRFLFGGLPPDLGAAETITALAKTVSACTSGMDLNLLSA
CLAAVVCSSEQPPLRPLGSPAGDGASVILKSVLERATYLLTDPQAVSSFSMPNPALWQAS
FDAFFGLLTKYCLSKYDSIMQSLVSPAQSNTELIGSEAARAVSREMPVELLRASLPHTNE
HQRKLLLNFAQRSMPVTGFNAHGESSGQINPESVSC
NT seq
2451 nt
NT seq
+upstream
nt +downstream
nt
atggagagatccgattgcaaagatttcatggacttgtctaactcttcgagctccatctca
gatagtgctctcttcgatgcatcacaatatgcattttttggacgagattcaggagaggaa
gttgaattgggtggtctagaggaagaaggaaacaattgtgttcccgtggtggatggtgga
tttggtgatgatacacatgagtaccatttgtttgaaaaagatgagggatcggctttgggg
tctttatctgacatagatgatctggcaactacattttcaaagttgaacagaaatgtcgca
ggacctaggcatccaggaattattggtgatcgtggatcaggatcgttttcgagggaaagt
tcatcggcagctgaatgggcaaaggaaactgatttccctgattgttttgatcagcatttg
tctgacactgaatgttaccaggaaaacaaaagatggtcttcacagtcttatttctctcct
gtgcatctgtcagagtcaaaaccgttgtatagaacatcctcaaatcctgagcaaccacaa
caacttcagcgcttctcaagcgaacccattttagtgccaaagtcatctttcacttctctc
cctcctccggttggcagatctctacaaggttcaccatacagtctatcacatcatcaaagc
atgccatctcttgctgctggacctcagtctccctattcaaatgccaatctctccactttg
tcaaatcctaatatccatttaccaggcttgtctcatgggcttcattatggtggaaacatg
ccacaatggatacctcccagtctttctcttgatacccgtctgcaaaatcactggactagt
catgtgagtctcagccatggggatcattctagactattaaatagtttatctccacatcaa
tttcctcagaatggtttgctatctcctctgttaatctcttcccagcaactgcagcagcga
agattgcatcatttagttcagccatctttagctcatttttctgcactgccttcccagttt
aattcctttccttctcccgcccacctcggtaagcatgggttggctgattttagagattca
aaatctaagtcatcacataaaggtagacagaatgtgcgcttttctaaactaggctctgaa
ggcggtagccaaaaaagtgagaataatgttcccaagttcagatctaagtacatgactggt
gatgaaatagagagcatcctgaaaatgcagcatcctgcaacacatggcaatgatccatat
gcggacgactattattaccaagctcgccttgcaaagaaagcagctgagtcgaggtcaaaa
catcgtttttgtccaaacaaggagcaaccttctcgatcacgcaatagtacagactcacag
cctcacctccatgttgatgctaaggggcaaatttcattttcttccatccgcaggcctcgt
cctcttcttgaatatgatccaccgggatttgtatgtaatggcagtggtgatcagaagatg
tctgagaaatctttggagcaggaaccaatgcttgctgctagaattacagtagaggatggt
ttttatcttctccttgaggttgatgacatcaataggctacttcagtttagtcagccgcaa
gatggcggtgttcagctgaggcggaagcggcagattctgttggaaggcatggctgcctca
cttcagcttgttgacccgcttggaaaaagtggcagttcagttgggctgacccctaaagat
gacattgtgttcttatggttggtgtctctaccaaaaggccggaaactcatttcaaggtat
cttcagcttcttgtacctggtggtgagcttgcaagaatagtttgcatgacaatttttcgc
catttaaggtttttgtttggcggccttccacctgatctaggagctgctgagactatcact
gcacttgcaaaaacagtctctgcatgtacaagtggcatggaccttaatttgcttagtgct
tgtctagctgctgttgtttgctcctcagagcagccacctcttcgccctcttggaagccct
gctggagatggagcctctgttattcttaaatctgttcttgaaagggcaacttatctcttg
actgatcctcaggctgttagcagcttcagcatgcctaaccctgccctttggcaggcatct
tttgatgccttttttggtttacttaccaagtattgtttgagcaagtatgactctataatg
caatcgctcgtttcaccagcccagtcaaacacagaactgattggttcagaagctgcaaga
gctgtaagcagagaaatgccagtcgaactcttacgtgctagtctcccacacacaaatgag
caccagaggaagctgttgttgaattttgctcagaggtccatgcctgtaactggattcaat
gctcatggtgaaagcagtggacaaataaatcctgaatctgtaagctgttag
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