Solanum tuberosum (potato): 102597998
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Entry
102597998 CDS
T02981
Name
(RefSeq) uncharacterized LOC102597998
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
sot
Solanum tuberosum (potato)
Pathway
sot03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sot00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
102597998
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sot03021
]
102597998
03019 Messenger RNA biogenesis [BR:
sot03019
]
102597998
Transcription machinery [BR:
sot03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
102597998
Messenger RNA biogenesis [BR:
sot03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
102597998
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf_PCFS4
CID
Collagen_bind_2
Pcf11_C
Motif
Other DBs
NCBI-GeneID:
102597998
NCBI-ProteinID:
XP_006339117
LinkDB
All DBs
Position
Un
AA seq
1066 aa
AA seq
DB search
MKSSRRSCLESGTKKPRLNEDSIGINRISNEGSFIPQRAVNSGSVAPRFRAIDSWEDPEN
SDSLCEPYQPQQPQQHQQQQQLISEYKRALAELTINSKPIITNLTIIAGENVRDAKAIAA
IICANILEIPSEQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVFCKAYRQVEPSVHSGMQ
RLFVTWRKVFPPQQLQLIEKELGFTTGVNGSSSGARRDDSKAQQTAHSIHVNPKYLEARQ
CLQQPTRAKGSADDITPGDIQKPERATSVGSERSWFDISAKCVQKEQLNERIREKTTSAA
YGDPEYVSDLSRGSGFGLRITGEKLKEEGRDKSWYNPANGKILSQRNGLDLKHGVQSLSQ
NTANSDAYPQPTHSFANQSSTLMDRSWQSSDEEEYMWDDVNCADKDQRASKDPYKTGLDN
QHPRPQNMFGLKAESEASADSLSREDNGQASSENQISSMWSDEARHLASVQSTPDHPRGH
LTSFSGLPTATNSIVGKSFQSQKDSSHVGTPSYGIAKTANGSRGTIMQPRETQGAAPPSL
ESAMRQLPPSPSISTGNFSQVVNSLTRDYHTQTESHADPRMSQFSRRSNLDPRKQVPQDS
LPMTSQSAHLVSSQISQTPIYNPSSMMSSFQEEHHVSFPEKIQQESPESEFSIPSQKSIV
TQLSGFADHSGTVPSILQGSESSGQTSMSSLLAAVMKSGVLNSSSSVGTPLNSRDKGPLS
SQAGAQPPIPSGPPIQLLSSGPKAPHSVVSVQSDRNVSNAPSYSQRNGERPRLPPDPAPT
PVGSESLQAPNVVNAASNPVAKLLNSLMAKGLISASKEESPTSTPPPTPPQTRFQCPPAS
ISSTPGVSAPISSSTCSSQKDELSLSKPAAKIPDALPQSNKEEREDAFKPGVIRESNPGV
ISELLDDVPHQCGICGLRLKLRVQLDRHLEWHALRNPDGKRLHSERRWYLNSGEWFAGTG
SVPHCGILAVPTGGSSKLSECTEVMVPADESQCVCVLCGQVFEDFYDEKSDKWMFKGAVY
MDDSLNESGIQNPIVHKNCTSEDSQNWMLKDDIKQESEDWFSDFMD
NT seq
3201 nt
NT seq
+upstream
nt +downstream
nt
atgaagagttctcgtagatcatgtctggaatcaggtacaaaaaagcccagattaaacgaa
gattctattggaatcaatcgcatttcaaatgaagggagttttatccctcaacgggctgtg
aattcaggctctgttgccccgagattcagggcaattgacagttgggaagatcccgagaac
agtgattcactctgtgaaccttaccagccgcaacagccgcagcaacatcagcagcaacaa
cagcttatcagcgaatataagagagccttagcagagcttaccattaattccaagccgata
atcacgaatttgactataattgctggtgaaaatgtgcgcgatgcgaaggccattgctgct
attatctgcgcgaacattctcgagattcctagtgagcaaaagctgccatctctctatctt
ttggacagtattgtgaagaatatcgggagggattatatcaagtattttgctgccaggctg
cctgaggttttctgcaaggcttatagacaggtagaaccttcggtacactctgggatgcag
cgtctttttgtaacctggagaaaagtattccctcctcagcaacttcaacttattgagaag
gagcttggatttacaactggtgtcaatggctcttcatcaggagcacgtagagatgattcg
aaggctcaacagactgcacatagcattcatgtaaatcccaagtatttagaggcaaggcag
tgcctacagcaaccaaccagagcaaaaggatcagctgatgacatcactccaggggacata
cagaaaccagagagagcaaccagtgtaggttctgaaagatcttggttcgatatatctgcc
aagtgtgttcagaaagagcagttgaatgagcgaatccgcgagaaaactacaagtgcagca
tatggagatcctgaatatgtttctgatttgtcaaggggttctggctttggattaagaata
acaggtgaaaagctaaaggaagagggacgtgataaatcttggtacaatcctgcaaatggt
aagattttaagtcaaagaaatggcttggaccttaagcatggagtccaaagtctatcccag
aatacggcaaattctgatgcatatccacaaccgacacactccttcgccaatcaaagtagt
actttgatggatcggagttggcagagttctgatgaagaggagtatatgtgggatgatgtc
aattgtgcagataaagatcaacgggcatccaaagatccatataaaactggcttagataat
caacatccgagaccccaaaacatgtttgggttaaaggctgaaagtgaagcctcggctgac
tctctttccagagaagacaatggccaagcatcttccgagaatcaaatatcatcgatgtgg
tcagatgaagctaggcatttggcttctgttcaaagtactccagatcatccaagaggtcat
ctaacctctttcagtgggttgccaacagctacaaactccatagttgggaaatctttccag
tcacagaaagattcaagtcatgtggggacaccaagttatgggatagcaaagactgcaaat
ggatccaggggaaccataatgcaaccacgagaaactcaaggagctgcccctccatcttta
gagtcagcgatgcgtcagcttcctccgtctccatcaatctcgaccggcaattttagtcaa
gtagttaacagtctcactagagattatcatacacagactgaatctcatgcagacccaaga
atgtctcaattttcaaggaggtcaaatttagatccccgtaagcaagtcccccaggactct
ctgccaatgacatctcagagtgctcatttggttagttcacagatatcacagactccaata
tataatccatcttccatgatgtcatcttttcaagaagaacatcatgtctcttttcctgaa
aaaatccaacaagaaagtcctgaatctgaattttccattcccagccaaaagtcaatagtc
actcagctttctggttttgctgatcattctggcactgtgccttccattcttcaaggctct
gaatcctcaggtcaaacgagtatgagtagtctgttggctgctgttatgaagagtggagta
cttaatagtagctctagtgttggcacaccactgaattctcgtgataaggggcctctgtca
tcccaagccggtgcacagcctcctataccaagtggtcctcctatccaacttttgtcatct
ggaccaaaggctccacattctgttgtgagcgtacaatcggacagaaatgtttcaaatgcc
ccaagttattcccagagaaatggagaacgaccacgactgccacctgaccctgctccaact
ccggtaggtagtgaatcattgcaggctccaaatgtggtaaatgctgcttctaatcctgtt
gcaaaacttttgaattcattgatggcaaagggattgatatctgcgtcaaaggaggagtct
ccaacttcaactcctccaccgacacctccacaaactcggttccagtgtcctcctgcaagc
atcagttcaactcctggtgtatctgctccaatttcctcatccacttgctcgtctcaaaag
gatgagctgtctctctctaaacctgctgctaaaatccctgatgcattacctcagtccaac
aaagaagagagagaagatgcatttaaaccaggtgtaattcgggagtccaatcctggtgtc
atcagtgaacttcttgatgacgttccacatcaatgtggcatatgtggtcttcgacttaag
ctccgagtgcaacttgatagacacttggaatggcacgcattaaggaatccagatgggaaa
cggttgcatagtgaaaggaggtggtatttaaattctggggaatggtttgctggaaccggt
agcgtcccacactgtggtatattggcagtaccaactggaggttctagcaaactatcagaa
tgcactgaggttatggttcctgctgatgaaagtcagtgtgtatgtgtcttgtgtggtcag
gtttttgaagatttttatgacgaaaagagtgacaagtggatgttcaaaggagctgtttac
atggatgattcattgaacgaaagcggtattcagaatcctatagtccacaagaactgtaca
tcagaagattctcaaaattggatgcttaaggatgatataaaacaggagtcggaagactgg
ttttctgatttcatggattaa
DBGET
integrated database retrieval system
