Solanum tuberosum (potato): 102599686
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Entry
102599686 CDS
T02981
Name
(RefSeq) enhancer of mRNA-decapping protein 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
sot
Solanum tuberosum (potato)
Pathway
sot03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sot00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102599686
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sot03019
]
102599686
Messenger RNA biogenesis [BR:
sot03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
102599686
mRNA degradation factors
5'-3' decay
Decapping complex
102599686
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_TEP1_C
WDR55
Beta-prop_EML_2
Beta-prop_Vps41
DUF6124
Phage_lysozyme
Motif
Other DBs
NCBI-GeneID:
102599686
NCBI-ProteinID:
XP_006346097
LinkDB
All DBs
Position
Un
AA seq
1407 aa
AA seq
DB search
MASSPGNPNQPGGTGTGTGTGPFDIHKFFKPSTPTNPNPQNPTLIPSPFPPPNASYPPPT
VAGVGPGGVYPYPPQTTTPFHHHAQFTHHLPQYSTPHDTQLMHQQRSMSFPTPPLQPPPP
TSSPHQFPNPNPGARLMALLSAPPSTMEVPIQSTMPMPPIQPTTSGSELSDFSSGPNVGV
AHSGPGPMRMPSSKLPKGRHLNGDHIVYDIDVRFPSEVQPQLEVTPITKYGSDPGLVLGR
QIAVNKTYICYGLKLGAIRVLNINTALRSLLKGLAQRVTDMAFFAEDVHLLASASVDGRV
YIWKITEGPDEEEKPQITGRIVIAIHIVGEGESVHPRVCWHCHKQEILVVGIGKCILKID
TTKVGKGVVFSADEPLRCPVDKLVDGVQLIGTHDGEVTDLSMCQWMTTRLVSASVDGTIK
IWEDRKPLPIAVLRPHDGHPVSSVTFSAAPHRPDHIVLITGGPLNREIKIWASASEEGWL
LPSDAESWRCTQTLELKSSAEANVEEAFFNQVVALSQAGLLLLANAKKNAIYAVHLEYGP
NPEATRMDYIAGFTVTMPILSFTGTSDLLPHGEQIVQVYCVQTQAIQQYALDLSQCLPPP
TESVVFERTESGISRDAASIEGFAPVDPPGSKQKEVPLSSSAPKSAVHDIDSEISQTARY
PTSTAPTESTTSSIPETKSSTLPSVTSDNDIAPSASPPPPLSPKLSRNLSGFRGPSNSFG
AETFDNDQVGNQKVVEYPVDPQKDGTPPNLSDIASLDDEHKTSRDDVPPGISHPVKFKHP
THLVTPSEILMARSSSEVSIVNEQKSESEMNVQDAVTNNDTRTVEMEVKVGGEAKFSQKT
DMGSQDLHSFVSENKEKVFCSQVSDLGLEMARECRALPPETYPVEESRQFDGVSGSEGPS
QPSVTPEEDHDSAKDISEKDLDSTMSVTVHQPSAPSAKGKKQKGKNSQVSGPSSALPSAF
NSTDSPNDTVVSSSTPSMESAFSQILSMREMLNQVLTMQKETQKQMEMMVAVPVTKEGRR
LEAALGRSMEKSVKANSDALWARLQEESAKQEKSLRDRTQQITNLISNCLNKDMPGLMEK
LMKKELAAVGQAVARSITPTIEKTISAAISEAFQKGVGDKAVNQLEKSVNSKLEATVARQ
IQAQFQTSGKQALQETLKSTLEVSVIPAFEMSCKAMFEQVNSTFQKGIADHTVAAQQQFE
SVHSPLAIALRDAINSASAMTQTLSGELADSQRQLLALAVSGANSQSANPLNHMNNGSLL
HEKIETPPDPTKEISRQLGEHKYEEAFTAALQMSDVSIVSWLCSQVDLAGILSLNPLPLS
QGVLLSLLQQLSCGISSETVQKLSWMRDVLSAINPNDPLIVVHVRPIFEQVYQMLLQRRN
SATTPPAELSIIRLLVHVINSMLMAVK
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
atggcttcttctcctggcaatccgaaccaaccaggtggtactggtactggtactggtact
ggaccatttgatatacacaaattcttcaaaccctcaaccccaacaaaccctaatccccaa
aaccctactttaattccatccccttttccacctccaaacgcttcttacccaccacccacc
gtcgccggagtcggacccggtggggtttacccgtacccacctcagactacaacccctttt
catcatcacgctcaattcactcaccacttgccgcaatacagtacaccgcatgatacccag
ttaatgcatcagcagagatccatgtctttccccactccaccacttcaaccaccaccacct
actagtagtcctcatcaattccctaaccctaaccctggtgctaggcttatggcactgttg
agtgccccaccgtctactatggaagttccgatacagtccactatgcctatgcctcccata
caacctactacttcggggtctgagctttcggatttctcttctggaccgaatgttggcgtt
gctcattcgggtccgggaccaatgagaatgccgagcagtaagttacctaaagggagacat
ttgaacggtgatcatattgtttatgatatagatgttaggtttcctagtgaggtgcagcca
cagctggaggttactcctattactaagtatggttcggatcccggtcttgtattaggccgg
caaattgcagttaacaaaacctatatatgttacggattgaaattgggggctattcgggtt
cttaacattaatactgcattgagatcattgcttaaaggtcttgcgcagagggtcacagac
atggctttctttgcagaggatgttcatctcttggctagtgcgagtgttgatggccgggtt
tatatatggaaaattactgaaggaccagatgaagaagagaagccacaaattacaggaagg
attgtcattgctattcatattgttggtgaaggggaatctgttcacccacgtgtttgttgg
cattgtcataaacaagaaattcttgtggttggaatcgggaaatgcattttgaaaattgat
accactaaagtgggaaaaggtgtagtattttcagcagatgaacctctgaggtgtcctgtt
gacaagttggttgacggggtacagcttattggtacccatgatggagaagtgactgattta
tcaatgtgccagtggatgaccactcgtttggtatctgcatcagtggatggcacgataaag
atatgggaagaccggaagccacttccaatcgcagttctcaggcctcatgatggtcatcct
gttagttctgttaccttctcggctgccccacaccgcccagatcacatcgtactcatcact
gggggtcctcttaatcgggaaataaagatatgggcatcagcgagtgaagaaggctggttg
cttcccagtgatgctgagtcatggcgctgtacacagacattggagctgaagagttcagct
gaggctaatgtcgaagaggcattttttaaccaagttgtagctttgtctcaagcaggtctg
ctcctactagctaatgcaaaaaagaatgctatatatgctgtgcatctagagtatggcccg
aatcccgaggctacccggatggattacatagcaggatttacagtcaccatgccaattttg
agtttcactgggacgagtgacctattgccccatggtgaacagattgtgcaggtgtattgt
gtacagacacaggccattcagcagtatgccttggacctgtcccagtgcttaccacctcca
acagagagtgtggtttttgaaaggacagaatctggcatttcgcgcgatgctgcaagcatt
gaaggatttgctcctgttgaccccccaggaagtaaacagaaggaggttcctttatctagt
tcagcacctaaatctgcagtgcatgacattgactctgagatttcacaaacagctagatat
cctacaagtactgcacctaccgaatcgaccacctcctccattccagaaactaaatcgtct
actttgcccagtgtaactagtgataatgatattgcccccagtgcatcacctcctcctcct
ttgagtcctaaattgtctcgaaacttatctggttttagaggtccgtcaaacagctttggg
gcagagacctttgataatgaccaagttggaaatcaaaaagttgttgaatatccagttgat
ccgcaaaaggatggcacgcccccaaacttgtcagatattgcttccttggacgatgaacat
aaaacgtcacgggatgatgttccccctggtatcagtcatcctgtaaagttcaagcaccca
actcatttggtgactccttcagagatattgatggctagatcatcctctgaggttagcatt
gttaatgagcagaaaagtgagtcagaaatgaatgttcaggatgctgtaactaacaatgac
acccgcactgtagagatggaggttaaagttggtggtgaagcaaaattcagtcaaaaaact
gatatgggctctcaagaccttcattcttttgtgtctgaaaataaagagaaagttttttgc
tctcaagtatctgatcttggattagaaatggctcgagaatgtcgtgccttacctcctgag
acctatcctgtagaggaatctaggcagtttgatggggttagtggaagtgagggaccatct
caaccttcagttacaccagaggaagaccatgactctgcaaaggacatctctgaaaaagat
ttagactcaactatgtcagtcactgttcatcaaccatcagctcccagtgcaaaagggaaa
aagcaaaaggggaagaattctcaagtgtctggcccatcttcagcattgcctagtgctttt
aattcaacagattctccaaatgacactgttgtcagctcaagtaccccttctatggaaagt
gctttctcacaaattctgtccatgcgtgagatgctaaatcaggttctgactatgcaaaaa
gaaacacaaaagcagatggaaatgatggttgctgttccagtgaccaaagaaggaagaaga
cttgaagctgccttgggacggagcatggaaaaatctgttaaggccaattctgatgcttta
tgggctcgtttacaagaagagagtgcaaaacaggagaagtctctccgtgatcgtacacaa
caaattaccaatttgatctctaactgcttaaacaaggacatgccaggtctgatggaaaaa
ttaatgaagaaagagctagcagctgttggacaagctgtagcacgcagtattacccctact
attgagaaaacaatatcagctgcaatttcagaggcattccagaaaggagttggtgacaag
gcagtgaaccaactagagaaatcagtaaactccaaacttgaagctactgtagctagacaa
atccaagcacaattccaaacctctggcaagcaagctcttcaggaaacactgaaatctact
ctggaagtctcagtgatccctgccttcgagatgtcatgcaaggcaatgtttgagcaagta
aattcaacatttcagaaaggcattgctgaccacacggttgctgcacaacagcaatttgag
tccgtgcattcgcctttggcaattgctctaagagatgccatcaattcagcatcggcaatg
acacagacattgagcggagagcttgctgatagtcagagacagttgcttgctcttgcagtt
tctggagcaaattcccaatcagcaaatccactcaaccacatgaataatggatcattgcta
catgaaaagattgagacacctccagatccaaccaaagagatatctagacagttgggggag
cacaagtatgaggaagcattcactgcagcattacaaatgagtgatgtgtcaattgtgtca
tggttatgctctcaggttgatttggctgggattttatccttgaatcccctccctttgagc
caaggagtgctcctttcacttcttcagcagttatcatgtggtattagctcagagacagtc
caaaaactctcttggatgagggatgtgctatctgccataaatccaaatgacccactgatc
gtagtgcatgtacggcccatctttgagcaagtatatcagatgttactacaacgcagaaac
agtgctaccacgcctcctgctgaactttcaatcatccggcttcttgtgcatgttatcaat
tcgatgctgatggctgttaaatga
DBGET
integrated database retrieval system
