Solanum tuberosum (potato): 102600806
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Entry
102600806 CDS
T02981
Symbol
LOS4
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 38
KO
K18655
ATP-dependent RNA helicase DDX19/DBP5 [EC:
5.6.2.7
]
Organism
sot
Solanum tuberosum (potato)
Pathway
sot03013
Nucleocytoplasmic transport
sot03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sot00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
102600806 (LOS4)
03015 mRNA surveillance pathway
102600806 (LOS4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sot03019
]
102600806 (LOS4)
Enzymes [BR:
sot01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
102600806 (LOS4)
Messenger RNA biogenesis [BR:
sot03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
102600806 (LOS4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Thi4
Motif
Other DBs
NCBI-GeneID:
102600806
NCBI-ProteinID:
XP_006367250
UniProt:
M1AG92
LinkDB
All DBs
Position
Un
AA seq
514 aa
AA seq
DB search
MADTSSTSTATSSTAASTTANPPESKSWADQADEIDQAEQSADQADEIDQAEQSSASNEE
GATAEINIGSLQVDESKRDNSTLSEPEDSSIQAVTSGDTMYKSAKRFEDLNLSPELLKGL
YVQMQFERPSKIQEISLPMILTPPYKNLIAQAHNGSGKTTCFVLGMLSRIDPKLAAPQAL
CICPTRELAIQNMEVLLKMGKFTGITSELGIPADSANYIPISKRPPVTAQVVIGTPGTIN
KWVTARKLGMSCMKILVFDEADHMLAESGFQDDSIRIMKAIVKASVNCQVLLFSATFGEN
VKAFVTKIVQDLFVQDYNQMFVKKEELSLDSVKQYKVQCPDELSKIMVIKDRILELGQKV
GQTIIFVRTRNSASMLHKSLVDYGYEVTTIQGALRQEDRDKIIKEFKDGLTQILISTDLL
ARGFDQSQVNLVVNYDLPVRHESPTEPDHEVYLHRIGRAGRFGRKGAIFNLLCSDRDNML
MSKIENHFNHQVAEIPSWNSEEDFENALKIAGLL
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
atggccgacacttccagtacctccactgccaccagtagcaccgccgcttctacgacagca
aacccaccggaatccaaaagttgggcagaccaagctgacgagatcgatcaagctgagcag
tcggcagaccaagccgacgagatcgatcaagctgagcagtcttccgcttctaatgaagaa
ggcgctactgccgagataaatatcggatctctacaagtcgatgagtccaaaagagacaac
tccactctctctgagccggaagattccagcatacaagcggttacatctggcgatactatg
tacaaatcagcaaagagatttgaggatttgaacttatctcctgagctattgaagggatta
tatgtacaaatgcagtttgagcgtcctagcaagattcaggaaattagtttgcctatgatt
cttacgcctccgtacaagaatcttattgctcaggctcataatggttctggtaaaactact
tgctttgtgcttgggatgttgagtcggattgatccaaagcttgctgcccctcaagctctc
tgtatctgtccaaccagagaattggctattcagaatatggaagtgctattgaagatgggg
aagttcactggcataacatcagagttaggtatcccagcagattctgccaactatattcca
atttcaaaacggccgcctgttacggcacaagtagtgattggcacacctgggactataaac
aagtgggtgacggcaaggaaactgggcatgagttgcatgaaaattcttgtgtttgatgaa
gcggaccacatgttggcagagagtggttttcaggatgattccataagaataatgaaggca
atcgttaaagccagcgttaactgccaggtgcttctgttttctgcaacgtttggggaaaat
gtcaaagcatttgtgacaaaaattgttcaagatcttttcgtgcaagattacaaccaaatg
tttgtgaagaaagaagaactttcactggattcagtgaagcagtataaagtgcagtgtcca
gatgaactttcaaaaatcatggtgattaaagacagaatacttgaactaggacagaaggtg
gggcaaacaattatattcgttcgtaccagaaacagtgcaagtatgttgcataagtcattg
gttgactatggctatgaagtgacaacaattcaaggtgctcttaggcaagaagacagagac
aaaataatcaaggagttcaaagatggattgacacaaattcttatatcaactgatcttctt
gctcgtggatttgaccaatcacaggttaatttggtggttaattatgacctccctgtgaga
catgagagtccaacagagccagatcatgaggtatacctgcatcggattggtagagcagga
cgttttggacgcaaaggtgcgatattcaacttgctgtgcagtgaccgagacaacatgcta
atgtcaaagattgagaaccatttcaaccatcaagtggctgagattccctcatggaatagt
gaagaagactttgaaaatgctctgaagatagctggcttgctgtaa
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