Solanum tuberosum (potato): 102601130
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Entry
102601130 CDS
T02981
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 56-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
sot
Solanum tuberosum (potato)
Pathway
sot03013
Nucleocytoplasmic transport
sot03015
mRNA surveillance pathway
sot03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sot00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102601130
09122 Translation
03013 Nucleocytoplasmic transport
102601130
03015 mRNA surveillance pathway
102601130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sot03019
]
102601130
03041 Spliceosome [BR:
sot03041
]
102601130
Enzymes [BR:
sot01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
102601130
Messenger RNA biogenesis [BR:
sot03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
102601130
Spliceosome [BR:
sot03041
]
Complex C
Other components
EJC/TREX
102601130
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
102601130
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
102601130
NCBI-ProteinID:
XP_006346265
LinkDB
All DBs
Position
Un
AA seq
428 aa
AA seq
DB search
MEDTKENDAYEEELLDYEEDDEKAPDSISGKINGESAKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLSTLQQIEPVAGQVAAIV
LCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKLHKELLKNECPHIVVGTPGRILA
LARDKDLSLRNVRHFILDECDKMLESLDMRRDVQAIFKTTPHDKQVMMFSATLSKEIRPI
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVS
RAAELNKLLVDCNFPSICIHSGMTQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNI
VINFDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQQRFEVDIKELPEQI
DTSTYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggaagacacaaaggagaacgatgcttacgaggaggagcttcttgactacgaagaagat
gatgaaaaagcccctgattccatctccggcaaaattaatggcgagtccgccaagaagggt
tacgttggcattcacagttccggattcagagactttctgctaaagccagagctattgcgg
gctattgtggattcagggtttgagcatccttctgaagtgcaacatgaatgtattccacaa
gcaattctaggcatggatgttctttgtcaagctaaatctggaatgggcaaaactgctgtt
tttgttctttcaacgctgcaacagattgaacctgttgctggtcaggttgctgccatagtt
ctatgtcacacaagggaattagcttatcagatctgtcatgaatttgagaggttcagcaca
tacttgcctgatatcaaggttgctgttttctatggtggtgtcaatatcaaacttcacaag
gagcttctaaagaatgaatgccctcatatagttgttggaactcctggaagaatacttgca
ttggctagagataaggacctgtctttgaggaatgtgaggcattttatactggatgaatgt
gacaaaatgcttgaatcacttgacatgagaagagatgtgcaggcaattttcaagacgact
cctcatgacaagcaagtaatgatgttttcagcaacactcagcaaagagattcgccccatt
tgcaagaaatttatgcaagatccaatggaaatatatgttgatgatgaggccaagttgacc
cttcatggacttgtacagcactacattaaattgagcgaactggagaagaaccggaagctg
aatgacctgctggatgctttggacttcaatcaagttgttatatttgtcaagagtgtaagc
agagcagcagagctgaataaattgcttgtcgactgcaattttccatctatctgcatccac
tctggaatgactcaggaagaaagattgactcgctataagggtttcaaggaggggcacaag
agaattcttgtggcaactgatttggttgggaggggcattgacattgaaagggtcaacatt
gttattaactttgacatgccagattctgcagatacttaccttcacagagtgggtagagct
ggtaggtttggaactaaaggccttgccatcacatttgtctcgtctgcatcagattctgat
gttcttaatcaggttcagcagaggtttgaagtggatattaaagagcttcctgagcagatt
gatacttccacatacatgccatcatag
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