Solanum tuberosum (potato): 102601432
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Entry
102601432 CDS
T02981
Name
(RefSeq) regulator of nonsense transcripts UPF3-like
KO
K14328
regulator of nonsense transcripts 3
Organism
sot
Solanum tuberosum (potato)
Pathway
sot03013
Nucleocytoplasmic transport
sot03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sot00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
102601432
03015 mRNA surveillance pathway
102601432
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sot03019
]
102601432
Messenger RNA biogenesis [BR:
sot03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
102601432
mRNA cycle factors
P-body specific factors
102601432
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_2
Motif
Other DBs
NCBI-GeneID:
102601432
NCBI-ProteinID:
XP_006339922
LinkDB
All DBs
Position
Un
AA seq
508 aa
AA seq
DB search
MKNRRTKVVLRHLPPTLSQSMLLEHVDSRFAGRYNWFTFRPAKTSLKHQSYSKAYIDFRN
MEDVTEFAEFFDGHMFVNEKGTQFKTIVEYAPSQRVPKHWLKKDAREGTILKDPAYMEFL
EFLAKPVENLPSAEIQLERKEAERAGSAKDAPIVTPLMDYVRQKRAVKSGARRSISNGKS
SKSVGGTSSRSPSSTASRRGSEKRTSTTMYVQRDSSKAGNSKDKSYILLPKRGDQQLSVK
SGSSAPGSEIDVVEGEIGRSVTADSGKKKILLLKGKEKEGPNVSGGSLAQQNVSSALKNS
PSLSALKQNQRQEASGRIIRSILLKDARQNQSAFQSDQIQDKDMRPPRPPSMQLFQKDTS
GANEDKVVGNEKHVVHIEKQERRSRNRDRPDRGVWAPLRRADSSQASNGSLSSGIPQSSQ
VREFVEGGQGELKNDLPIARGTEFRPIGSGRNSHSSADNGNYKHGGRRGLRDVAGTSIGE
GKPVKKGGTSAYSSLEKQVWVQKSSSGS
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
atgaagaatcggcgaaccaaagtcgttctacggcacttgccgccgacactttctcagtct
atgcttctggagcatgttgattctcgctttgctggtcgatacaattggttcacttttcgc
ccagccaaaaccagcctgaagcatcaaagctattcaaaagcctatattgactttcggaat
atggaagatgttactgagtttgctgagttctttgatgggcacatgtttgtgaatgagaaa
ggcactcagttcaaaaccattgtcgagtatgctccttcccagcgtgtcccaaagcactgg
ctcaagaaggatgcccgtgaagggaccatattgaaagatcctgcatatatggagttcctt
gaatttcttgcaaagcctgttgagaatcttccgagtgctgagatacaattggagagaaag
gaagctgaacgagctggctcagcaaaggatgctcctatagttactccattaatggattat
gtacgtcagaaaagagctgtgaagagtggagctcggaggtctatctctaatggaaaatca
agtaaaagtgttggtggcacaagctcaagaagtcctagctcaactgcatctagacgaggc
tctgaaaagagaacttctacaaccatgtatgttcaacgggacagttctaaggctggcaac
agtaaggacaaatcatatattctactgccaaaacgtggtgatcagcagctctctgtcaag
tctggtagttctgctcctggatctgagattgatgtagtggaaggggaaattggtcgttca
gtaactgctgatagtgggaagaagaaaatcctgctcttgaaggggaaggaaaaagaaggt
cctaatgtttctggtggttcactagctcaacagaatgtgtcatctgctctcaagaattca
cctagtttatctgctctgaaacagaaccagcgccaagaggcaagtggcagaatcatcaga
agtattcttctaaaggatgctcgacagaatcagtcagcatttcaatcagatcaaatacag
gataaggacatgagacctcctcggccaccaagtatgcagttgtttcagaaggatacaagt
ggagctaatgaggataaggttgttggaaatgaaaagcatgttgtccacattgaaaaacaa
gaaagacgttctaggaatagagatcggcctgatcgtggtgtttgggctcctcttcgtcgt
gctgatagttcacaagccagtaatggatctttatcatctggtattcctcaatcttcccaa
gtgcgggagtttgttgaagggggtcaaggagaattgaaaaatgatctaccaattgcacgc
ggtactgagttcagaccaattggaagtgggcgtaattctcactcttctgcggataatggt
aactataaacatggtggtcgtcgtggtttgagggatgtggctggcacttctattggggaa
ggaaaacccgtgaaaaagggaggcacttctgcttacagttctcttgagaaacaagtgtgg
gttcaaaagtcaagttctggttcttag
DBGET
integrated database retrieval system
